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With ggplot2 v3.4.1, the guides are collected normally:
library(numbat) library(dplyr) nb = readRDS(url('http://pklab.med.harvard.edu/teng/data/nb_TNBC1.rds')) nb$bulk_clones %>% filter(n_cells > 50) %>% plot_bulks( min_LLR = 10, # filtering CNVs by evidence legend = TRUE )
With ggplot2 v3.5.0, guides are not combined correctly and some are missing:
SessionInfo:
R version 4.2.2 Patched (2022-11-10 r83330) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 20.04.6 LTS Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0 locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] dplyr_1.1.3 numbat_1.4.0 Matrix_1.6-5 loaded via a namespace (and not attached): [1] viridis_0.6.2 tidyr_1.3.0 tidygraph_1.3.1 [4] jsonlite_1.8.8 viridisLite_0.4.1 ggraph_2.1.0 [7] RhpcBLASctl_0.21-247.1 RcppParallel_5.1.6 yulab.utils_0.0.6 [10] ggrepel_0.9.2 pillar_1.9.0 lattice_0.20-45 [13] glue_1.7.0 quadprog_1.5-8 phangorn_2.11.1 [16] uuid_1.1-0 digest_0.6.27 polyclip_1.10-4 [19] colorspace_2.1-0 ggfun_0.0.9 htmltools_0.5.4 [22] pkgconfig_2.0.3 logger_0.2.2 purrr_1.0.1 [25] patchwork_1.2.0 tidytree_0.4.6 scales_1.3.0 [28] ggplotify_0.1.0 tweenr_2.0.2 ggforce_0.4.1 [31] tibble_3.2.1 generics_0.1.0 farver_2.1.1 [34] ggplot2_3.5.0 withr_3.0.0 parallelDist_0.2.6 [37] repr_1.1.6 lazyeval_0.2.2 cli_3.6.2 [40] magrittr_2.0.3 crayon_1.5.2 evaluate_0.20 [43] fansi_1.0.4 nlme_3.1-161 MASS_7.3-58 [46] Cairo_1.6-0 tools_4.2.2 data.table_1.14.10 [49] lifecycle_1.0.4 stringr_1.5.1 aplot_0.1.9 [52] hahmmr_1.0.0 ggtree_3.6.2 munsell_0.5.0 [55] compiler_4.2.2 gridGraphics_0.5-1 rlang_1.1.3 [58] grid_4.2.2 pbdZMQ_0.3-9 IRkernel_1.3.2 [61] igraph_2.0.2 base64enc_0.1-3 labeling_0.4.2 [64] scistreer_1.2.0 gtable_0.3.4 codetools_0.2-18 [67] graphlayouts_0.8.4 R6_2.5.1 gridExtra_2.3 [70] fastmap_1.1.0 utf8_1.2.2 fastmatch_1.1-3 [73] treeio_1.22.0 ape_5.7-1 stringi_1.8.3 [76] parallel_4.2.2 IRdisplay_1.1 Rcpp_1.0.12 [79] vctrs_0.6.5 tidyselect_1.2.0
The text was updated successfully, but these errors were encountered:
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With ggplot2 v3.4.1, the guides are collected normally:
With ggplot2 v3.5.0, guides are not combined correctly and some are missing:
SessionInfo:
The text was updated successfully, but these errors were encountered: