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DESCRIPTION
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DESCRIPTION
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Package: zellkonverter
Title: Conversion Between scRNA-seq Objects
Version: 1.15.0
Date: 2024-05-01
Authors@R:
c(person(given = "Luke",
family = "Zappia",
role = c("aut", "cre"),
email = "luke@lazappi.id.au",
comment = c(ORCID = "0000-0001-7744-8565")),
person(given = "Aaron",
family = "Lun",
role = c("aut"),
email = "infinite.monkeys.with.keyboards@gmail.com",
comment = c(ORCID = "0000-0002-3564-4813")),
person(given = "Jack",
family = "Kamm",
role = c("ctb"),
email = "jackkamm@gmail.com",
comment = c(ORCID = "0000-0003-2412-756X")),
person(given = "Robrecht",
family = "Cannoodt",
role = c("ctb"),
email = "rcannood@gmail.com",
comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood"))
)
Description:
Provides methods to convert between Python AnnData objects and
SingleCellExperiment objects. These are primarily intended for use by
downstream Bioconductor packages that wrap Python methods for single-cell
data analysis. It also includes functions to read and write H5AD files used
for saving AnnData objects to disk.
biocViews: SingleCell, DataImport, DataRepresentation
License: MIT + file LICENSE
Imports:
Matrix,
basilisk,
reticulate,
SingleCellExperiment (>= 1.11.6),
SummarizedExperiment,
DelayedArray,
methods,
S4Vectors,
utils,
cli
Suggests:
anndata,
BiocFileCache,
BiocStyle,
covr,
HDF5Array,
knitr,
pkgload,
rmarkdown,
rhdf5 (>= 2.45.1),
scRNAseq,
spelling,
testthat,
withr
Collate:
'AnnData2SCE.R'
'SCE2AnnData.R'
'ui.R'
'basilisk.R'
'read.R'
'reticulate.R'
'utils.R'
'validation.R'
'write.R'
'zellkonverter-package.R'
URL: https://github.com/theislab/zellkonverter
BugReports: https://github.com/theislab/zellkonverter/issues
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Language: en-GB
StagedInstall: no
VignetteBuilder: knitr