From e74033555162280cabd4859928aa2dead3cb2cf5 Mon Sep 17 00:00:00 2001 From: nfrerebeau <33983845+nfrerebeau@users.noreply.github.com> Date: Fri, 20 Sep 2019 15:11:41 +0200 Subject: [PATCH] Update DESCRIPTION --- .zenodo.json | 8 +++++++- DESCRIPTION | 4 ++-- README.Rmd | 2 +- README.md | 7 ++++--- codemeta.json | 8 ++++---- 5 files changed, 18 insertions(+), 11 deletions(-) diff --git a/.zenodo.json b/.zenodo.json index aa21277f..f8b5702f 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -1,5 +1,5 @@ { - "description": "

An easy way to examine archaeological count data (artifacts, faunal remains, etc.). This package includes several measures of diversity: e.g.  richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), diversity/dominance and evenness (Brillouin, Shannon, Simpson, etc.), turnover and similarity (Brainerd-Robinson, ...). Most of these methods are described and discussed in Maguran (1988) <doi:10.1007/978-94-015-7358-0>. It also provides matrix seriation methods (reciprocal ranking, CA-based seriation) for chronological modeling and dating. The package make it easy to visualize count data and statistical thresholds: rank/abundance plots, Ford (1972) <isbn:0913134082> and Bertin (1977) <isbn:2082111121> diagrams, etc.

", + "description": "

An easy way to examine archaeological count data. This package provides a convenient and reproducible toolkit for relative and absolute dating and analysis of (chronological) patterns. It includes functions for matrix seriation (reciprocal ranking, CA-based seriation), chronological modeling and dating of archaeological assemblages and/or objects. Beyond these, the package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.

", "creators": [ { "orcid": "0000-0001-5759-4944", @@ -30,6 +30,12 @@ "affiliation": "Universit\u00e9 de Nantes", "type": "Other", "name": "Philippe, Anne" + }, + { + "orcid": "0000-0002-1061-4642", + "affiliation": "CNRS", + "type": "Other", + "name": "Fourvel, Jean-Baptiste" } ], "license": "GPL-3.0", diff --git a/DESCRIPTION b/DESCRIPTION index 351bd2c3..10a919e5 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -30,8 +30,8 @@ Authors@R: person(given = "Jean-Baptiste", family = "Fourvel", role = "ctb", - email = "anne.philippe@univ-nantes.fr", - comment = c(ORCID = "https://orcid.org/0000-0002-1061-4642 "))) + email = "jbfourvel@yahoo.com", + comment = c(ORCID = "https://orcid.org/0000-0002-1061-4642"))) Maintainer: Nicolas Frerebeau Description: An easy way to examine archaeological count data. This package diff --git a/README.Rmd b/README.Rmd index 5f52416e..bb5462a5 100644 --- a/README.Rmd +++ b/README.Rmd @@ -247,7 +247,7 @@ plot_time(merzbach_count, highlight = "FIT", roll = TRUE) + ``` ## Contributing -Please note that the `tabula` project is released with a [Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project, you agree to abide by its terms. +Please note that the `tabula` project is released with a [Contributor Code of Conduct](https://github.com/nfrerebeau/tabula/blob/master/.github/CODE_OF_CONDUCT.md). By contributing to this project, you agree to abide by its terms. [^1]: Adapted from Dan Gopstein's original [idea](https://dgopstein.github.io/articles/spot-matrix/). [^2]: Adapted from Ben Marwick's original [idea](https://github.com/benmarwick/signatselect/). diff --git a/README.md b/README.md index f1d501c2..3b1f7ce9 100644 --- a/README.md +++ b/README.md @@ -174,7 +174,7 @@ incidence <- IncidenceMatrix(data = sample(0:1, 400, TRUE, c(0.6, 0.4)), # Correspondance analysis-based seriation (indices <- seriate_reciprocal(incidence, margin = c(1, 2))) #> Permutation order for matrix seriation: -#> Matrix ID: 647a4ee7-2f20-4632-98e9-fb006408c011 +#> Matrix ID: 7ff145b5-32f6-4f16-a298-37c6eb6a46a9 #> Row order: 1 4 20 3 9 16 19 10 13 2 11 7 17 5 6 18 14 15 8 12 #> Column order: 1 16 9 4 8 14 3 20 13 2 6 18 7 17 5 11 19 12 15 10 #> Method: reciprocal @@ -312,8 +312,9 @@ plot_time(merzbach_count, highlight = "FIT", roll = TRUE) + ## Contributing Please note that the `tabula` project is released with a [Contributor -Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project, -you agree to abide by its terms. +Code of +Conduct](https://github.com/nfrerebeau/tabula/blob/master/.github/CODE_OF_CONDUCT.md). +By contributing to this project, you agree to abide by its terms. 1. Adapted from Dan Gopstein’s original [idea](https://dgopstein.github.io/articles/spot-matrix/). diff --git a/codemeta.json b/codemeta.json index 1c281dcd..66e923b3 100644 --- a/codemeta.json +++ b/codemeta.json @@ -5,8 +5,8 @@ ], "@type": "SoftwareSourceCode", "identifier": "tabula", - "description": "An easy way to examine archaeological count data. This package provides a convenient and reproducible toolkit for relative and absolute dating and analysis of (chronological) patterns. It includes functions for matrix seriation (reciprocal ranking, CA-based seriation), chronological modeling and dating of archaeological assemblages and/or objects. Beyond these, the package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.", - "name": "tabula: Analysis, Seriation and Visualization of Archaeological Count Data", + "description": "An easy way to examine archaeological count data. This package provides a convenient and reproducible toolkit for relative and absolute dating and analysis of (chronological) patterns. It includes functions for matrix seriation (reciprocal ranking, CA-based seriation), chronological modeling and dating of archaeological assemblages and/or objects. Beyond these, the package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.", + "name": "tabula: Analysis, Seriation and Visualization of Archaeological Count Data", "codeRepository": "http://github.com/nfrerebeau/tabula", "relatedLink": [ "http://tabula.archaeo.science", @@ -70,8 +70,8 @@ "@type": "Person", "givenName": "Jean-Baptiste", "familyName": "Fourvel", - "email": "anne.philippe@univ-nantes.fr", - "@id": "https://orcid.org/0000-0002-1061-4642 " + "email": "jbfourvel@yahoo.com", + "@id": "https://orcid.org/0000-0002-1061-4642" } ], "copyrightHolder": {},