From e74033555162280cabd4859928aa2dead3cb2cf5 Mon Sep 17 00:00:00 2001
From: nfrerebeau <33983845+nfrerebeau@users.noreply.github.com>
Date: Fri, 20 Sep 2019 15:11:41 +0200
Subject: [PATCH] Update DESCRIPTION
---
.zenodo.json | 8 +++++++-
DESCRIPTION | 4 ++--
README.Rmd | 2 +-
README.md | 7 ++++---
codemeta.json | 8 ++++----
5 files changed, 18 insertions(+), 11 deletions(-)
diff --git a/.zenodo.json b/.zenodo.json
index aa21277f..f8b5702f 100644
--- a/.zenodo.json
+++ b/.zenodo.json
@@ -1,5 +1,5 @@
{
- "description": "
An easy way to examine archaeological count data (artifacts, faunal remains, etc.). This package includes several measures of diversity: e.g. richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), diversity/dominance and evenness (Brillouin, Shannon, Simpson, etc.), turnover and similarity (Brainerd-Robinson, ...). Most of these methods are described and discussed in Maguran (1988) <doi:10.1007/978-94-015-7358-0>. It also provides matrix seriation methods (reciprocal ranking, CA-based seriation) for chronological modeling and dating. The package make it easy to visualize count data and statistical thresholds: rank/abundance plots, Ford (1972) <isbn:0913134082> and Bertin (1977) <isbn:2082111121> diagrams, etc.
",
+ "description": "An easy way to examine archaeological count data. This package provides a convenient and reproducible toolkit for relative and absolute dating and analysis of (chronological) patterns. It includes functions for matrix seriation (reciprocal ranking, CA-based seriation), chronological modeling and dating of archaeological assemblages and/or objects. Beyond these, the package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.
",
"creators": [
{
"orcid": "0000-0001-5759-4944",
@@ -30,6 +30,12 @@
"affiliation": "Universit\u00e9 de Nantes",
"type": "Other",
"name": "Philippe, Anne"
+ },
+ {
+ "orcid": "0000-0002-1061-4642",
+ "affiliation": "CNRS",
+ "type": "Other",
+ "name": "Fourvel, Jean-Baptiste"
}
],
"license": "GPL-3.0",
diff --git a/DESCRIPTION b/DESCRIPTION
index 351bd2c3..10a919e5 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -30,8 +30,8 @@ Authors@R:
person(given = "Jean-Baptiste",
family = "Fourvel",
role = "ctb",
- email = "anne.philippe@univ-nantes.fr",
- comment = c(ORCID = "https://orcid.org/0000-0002-1061-4642 ")))
+ email = "jbfourvel@yahoo.com",
+ comment = c(ORCID = "https://orcid.org/0000-0002-1061-4642")))
Maintainer: Nicolas Frerebeau
Description: An easy way to examine archaeological count data. This package
diff --git a/README.Rmd b/README.Rmd
index 5f52416e..bb5462a5 100644
--- a/README.Rmd
+++ b/README.Rmd
@@ -247,7 +247,7 @@ plot_time(merzbach_count, highlight = "FIT", roll = TRUE) +
```
## Contributing
-Please note that the `tabula` project is released with a [Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project, you agree to abide by its terms.
+Please note that the `tabula` project is released with a [Contributor Code of Conduct](https://github.com/nfrerebeau/tabula/blob/master/.github/CODE_OF_CONDUCT.md). By contributing to this project, you agree to abide by its terms.
[^1]: Adapted from Dan Gopstein's original [idea](https://dgopstein.github.io/articles/spot-matrix/).
[^2]: Adapted from Ben Marwick's original [idea](https://github.com/benmarwick/signatselect/).
diff --git a/README.md b/README.md
index f1d501c2..3b1f7ce9 100644
--- a/README.md
+++ b/README.md
@@ -174,7 +174,7 @@ incidence <- IncidenceMatrix(data = sample(0:1, 400, TRUE, c(0.6, 0.4)),
# Correspondance analysis-based seriation
(indices <- seriate_reciprocal(incidence, margin = c(1, 2)))
#> Permutation order for matrix seriation:
-#> Matrix ID: 647a4ee7-2f20-4632-98e9-fb006408c011
+#> Matrix ID: 7ff145b5-32f6-4f16-a298-37c6eb6a46a9
#> Row order: 1 4 20 3 9 16 19 10 13 2 11 7 17 5 6 18 14 15 8 12
#> Column order: 1 16 9 4 8 14 3 20 13 2 6 18 7 17 5 11 19 12 15 10
#> Method: reciprocal
@@ -312,8 +312,9 @@ plot_time(merzbach_count, highlight = "FIT", roll = TRUE) +
## Contributing
Please note that the `tabula` project is released with a [Contributor
-Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this project,
-you agree to abide by its terms.
+Code of
+Conduct](https://github.com/nfrerebeau/tabula/blob/master/.github/CODE_OF_CONDUCT.md).
+By contributing to this project, you agree to abide by its terms.
1. Adapted from Dan Gopstein’s original
[idea](https://dgopstein.github.io/articles/spot-matrix/).
diff --git a/codemeta.json b/codemeta.json
index 1c281dcd..66e923b3 100644
--- a/codemeta.json
+++ b/codemeta.json
@@ -5,8 +5,8 @@
],
"@type": "SoftwareSourceCode",
"identifier": "tabula",
- "description": "An easy way to examine archaeological count data. This package provides a convenient and reproducible toolkit for relative and absolute dating and analysis of (chronological) patterns. It includes functions for matrix seriation (reciprocal ranking, CA-based seriation), chronological modeling and dating of archaeological assemblages and/or objects. Beyond these, the package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.",
- "name": "tabula: Analysis, Seriation and Visualization of Archaeological Count Data",
+ "description": "An easy way to examine archaeological count data. This package provides a convenient and reproducible toolkit for relative and absolute dating and analysis of (chronological) patterns. It includes functions for matrix seriation (reciprocal ranking, CA-based seriation), chronological modeling and dating of archaeological assemblages and/or objects. Beyond these, the package provides several tests and measures of diversity: heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.), richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.), turnover and similarity (Brainerd-Robinson, etc.). The package make it easy to visualize count data and statistical thresholds: rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.",
+ "name": "tabula: Analysis, Seriation and Visualization of Archaeological Count Data",
"codeRepository": "http://github.com/nfrerebeau/tabula",
"relatedLink": [
"http://tabula.archaeo.science",
@@ -70,8 +70,8 @@
"@type": "Person",
"givenName": "Jean-Baptiste",
"familyName": "Fourvel",
- "email": "anne.philippe@univ-nantes.fr",
- "@id": "https://orcid.org/0000-0002-1061-4642 "
+ "email": "jbfourvel@yahoo.com",
+ "@id": "https://orcid.org/0000-0002-1061-4642"
}
],
"copyrightHolder": {},