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DESCRIPTION
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DESCRIPTION
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Package: tabula
Title: Analysis, Seriation and Visualization of Archaeological
Count Data
Version: 1.5.0
Authors@R:
c(person(given = "Nicolas",
family = "Frerebeau",
role = c("aut", "cre"),
email = "nicolas.frerebeau@u-bordeaux-montaigne.fr",
comment = c(ORCID = "https://orcid.org/0000-0001-5759-4944")),
person(given = "Brice",
family = "Lebrun",
role = "ctb",
email = "brice.lebrun@u-bordeaux-montaigne.fr",
comment = c(ORCID = "https://orcid.org/0000-0001-7503-8685")),
person(given = "Matthew",
family = "Peeples",
role = "ctb",
email = "matthew.peeples@asu.edu",
comment = c(ORCID = "https://orcid.org/0000-0003-4496-623X")),
person(given = "Ben",
family = "Marwick",
role = "ctb",
email = "bmarwick@uw.edu",
comment = c(ORCID = "https://orcid.org/0000-0001-7879-4531")),
person(given = "Anne",
family = "Philippe",
role = "ctb",
email = "anne.philippe@univ-nantes.fr"),
person(given = "Jean-Baptiste",
family = "Fourvel",
role = "ctb",
email = "fourvel@mmsh.univ-aix.fr",
comment = c(ORCID = "https://orcid.org/0000-0002-1061-4642")))
Maintainer: Nicolas Frerebeau
<nicolas.frerebeau@u-bordeaux-montaigne.fr>
Description: An easy way to examine archaeological count data. This package
provides a convenient and reproducible toolkit for relative and absolute
dating and analysis of (chronological) patterns. It includes functions for
matrix seriation (reciprocal ranking, CA-based seriation), chronological
modeling and dating of archaeological assemblages and/or objects.
Beyond these, the package provides several tests and measures of diversity:
heterogeneity and evenness (Brillouin, Shannon, Simpson, etc.),
richness and rarefaction (Chao1, Chao2, ACE, ICE, etc.),
turnover and similarity (Brainerd-Robinson, etc.).
The package make it easy to visualize count data and statistical thresholds:
rank vs. abundance plots, heatmaps, Ford (1962) and Bertin (1977) diagrams.
License: GPL-3
URL: http://tabula.archaeo.science,
http://github.com/nfrerebeau/tabula,
https://cran.r-project.org/package=tabula
BugReports: http://github.com/nfrerebeau/tabula/issues
Depends:
R (>= 3.2),
arkhe
Imports:
ca (>= 0.71),
ggplot2 (>= 3.2.1),
grDevices,
methods,
rlang (>= 0.4.0),
stats,
utils
Suggests:
covr (>= 3.3.1),
khroma (>= 1.3.0),
knitr,
magrittr (>= 1.5),
pbapply (>= 1.4-2),
rmarkdown,
testthat (>= 2.2.1),
vdiffr (>= 0.3.1)
VignetteBuilder:
knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Collate:
'utilities.R'
'AllClasses.R'
'AllGenerics.R'
'coerce.R'
'data.R'
'date.R'
'deprecate.R'
'extract.R'
'index-diversity.R'
'index-heterogeneity.R'
'index-rarefaction.R'
'index-richness.R'
'index-similarity.R'
'index-turnover.R'
'plot-prepare.R'
'plot-bar.R'
'plot-date.R'
'plot-diversity.R'
'plot-matrix.R'
'plot-rank.R'
'plot-spot.R'
'plot-time.R'
'refine.R'
'seriation.R'
'seriate.R'
'show.R'
'statistics.R'
'tabula-package.R'
'test.R'
'validate.R'
'zzz.R'