Polarity

[Need to be updated]

This is a leg fold formation simulation package for the article:

Mechanical control of morphogenesis robustness in an inherently challenging environment

Emmanuel Martin, Sophie Theis, Guillaume Gay, Bruno Monier, and Magali Suzanne (link).

Try it with my binder by clicking the badge bellow:

[Need to be updated]

Dependencies

• python > 3.6
• tyssue >= 0.7.0

Installation

This package is based on the tyssue library and its dependencies.

The recommanded installation route is to use the conda package manager. You can get a conda distribution for your OS at https://www.anaconda.com/download . Make sure to choose a python 3.6 version. Once you have installed conda, you can install tyssue with:

$ conda install -c conda-forge tyssue

You can then download and install polarity from github:

• with git:

$ git clone https://github.com/suzannelab/polarity.git
$ cd polarity
$ python setup.py install

• or by downloading https://github.com/suzannelab/polarity/archive/master.zip , uncompressing the archive and running python setup.py install in the root directory.

Licence

This work is free software, published under the MPLv2 licence, see LICENCE for details.

© The article authors -- all rights reserved