Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Mac OS error with :python -c "import opensim" #204

Open
katUTC opened this issue Oct 2, 2019 · 2 comments
Open

Mac OS error with :python -c "import opensim" #204

katUTC opened this issue Oct 2, 2019 · 2 comments

Comments

@katUTC
Copy link

katUTC commented Oct 2, 2019

Hello,
Having reinstalled anaconda and conferred with my collaborators concerning the issues I am having installing for a MacOS, I have decided to post concerning this issue. I've found that someone else had the same issue and posted in a forum elsewhere with no response.
The installation goes without error until the step:
python -c "import opensim"

which gives the following error:
Fatal Python error: PyThreadState_Get: no current thread

Abort trap: 6

conda info gives:
active environment : opensim-rl
active env location : /Users/kat/anaconda2/envs/opensim-rl
shell level : 2
user config file : /Users/kat/.condarc
populated config files : /Users/kat/.condarc
conda version : 4.6.11
conda-build version : 3.17.8
python version : 2.7.16.final.0
base environment : /Users/kat/anaconda2 (writable)
channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/free/osx-64
https://repo.anaconda.com/pkgs/free/noarch
https://repo.anaconda.com/pkgs/r/osx-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /Users/kat/anaconda2/pkgs
/Users/kat/.conda/pkgs
envs directories : /Users/kat/anaconda2/envs
/Users/kat/.conda/envs
platform : osx-64
user-agent : conda/4.6.11 requests/2.21.0 CPython/2.7.16 Darwin/18.7.0 OSX/10.14.6
UID:GID : 501:20
netrc file : None
offline mode : False

and Conda list gives:
WARNING: The conda.compat module is deprecated and will be removed in a future release.

packages in environment at /Users/kat/anaconda2/envs/opensim-rl:

Name Version Build Channel

ca-certificates 2019.9.11 hecc5488_0 conda-forge
certifi 2019.6.16 py36_1 conda-forge
cloudpickle 1.2.2 pypi_0 pypi
curl 7.65.3 h22ea746_0 conda-forge
cycler 0.10.0 pypi_0 pypi
expat 2.2.5 h6de7cb9_1003 conda-forge
future 0.17.1 pypi_0 pypi
gettext 0.19.8.1 h46ab8bc_1002 conda-forge
git 2.23.0 pl526hbdf3604_2 conda-forge
gym 0.14.0 pypi_0 pypi
kiwisolver 1.1.0 pypi_0 pypi
krb5 1.16.3 hcfa6398_1001 conda-forge
lapack 3.6.1 ha44fe06_2 conda-forge
libcurl 7.65.3 h16faf7d_0 conda-forge
libcxx 4.0.1 hcfea43d_1
libcxxabi 4.0.1 hcfea43d_1
libedit 3.1.20181209 hb402a30_0
libffi 3.2.1 h475c297_4
libgfortran 3.0.1 h93005f0_2
libiconv 1.15 h01d97ff_1005 conda-forge
libssh2 1.8.2 hcdc9a53_2 conda-forge
matplotlib 3.1.1 pypi_0 pypi
ncurses 6.1 h0a44026_1
numpy 1.17.2 pypi_0 pypi
openblas 0.2.19 0 kidzik
opensim 4.0.0 py36_17 kidzik
openssl 1.1.1c h01d97ff_0 conda-forge
osim-rl 3.0.6 pypi_0 pypi
pcre 8.41 h0a44026_1003 conda-forge
perl 5.26.2 haec8ef5_1006 conda-forge
pip 19.2.3 py36_0
pyglet 1.3.2 pypi_0 pypi
pyparsing 2.4.2 pypi_0 pypi
python 3.6.9 h359304d_0
python-dateutil 2.8.0 pypi_0 pypi
readline 7.0 h1de35cc_5
redis 3.3.8 pypi_0 pypi
scipy 1.3.1 pypi_0 pypi
setuptools 41.2.0 py36_0
six 1.12.0 pypi_0 pypi
sqlite 3.29.0 ha441bb4_0
timeout-decorator 0.4.1 pypi_0 pypi
tk 8.6.9 h2573ce8_1003 conda-forge
wheel 0.33.6 py36_0
xz 5.2.4 h1de35cc_4
zlib 1.2.11 h1de35cc_3

Aside:
I have tried on anaconda 3 and anaconda 2 which give the exact same errors.

I'ld be ever so grateful for some advice to get this to work on a Mac. Thank you so much in advance.

-Kat
@vittorione94
Copy link

@katUTC did you find a solution to this? I have the exact same problem!

(opensim-rl) Vittorios-MBP:OpenSimChallenge vittorio$ conda list
# packages in environment at /Users/vittorio/opt/anaconda3/envs/opensim-rl:
#
# Name                    Version                   Build  Channel
ca-certificates           2019.11.27                    0  
certifi                   2019.11.28               py36_0  
cloudpickle               1.2.2                    pypi_0    pypi
cycler                    0.10.0                   pypi_0    pypi
expat                     2.2.6                h0a44026_0  
future                    0.18.2                   pypi_0    pypi
git                       2.23.0          pl526h6951d83_0  
gym                       0.15.4                   pypi_0    pypi
kiwisolver                1.1.0                    pypi_0    pypi
krb5                      1.16.4               hddcf347_0  
lapack                    3.6.1                ha44fe06_2    conda-forge
libcurl                   7.67.0               h051b688_0  
libcxx                    4.0.1                hcfea43d_1  
libcxxabi                 4.0.1                hcfea43d_1  
libedit                   3.1.20181209         hb402a30_0  
libffi                    3.2.1                h475c297_4  
libgfortran               3.0.1                h93005f0_2  
libiconv                  1.15              h01d97ff_1005    conda-forge
libssh2                   1.8.2                ha12b0ac_0  
matplotlib                3.1.2                    pypi_0    pypi
ncurses                   6.1                  h0a44026_1  
numpy                     1.18.1                   pypi_0    pypi
openblas                  0.2.19                        0    kidzik
opencv-python             4.1.2.30                 pypi_0    pypi
opensim                   4.0.0                   py36_17    kidzik
openssl                   1.1.1d               h1de35cc_3  
osim-rl                   3.0.11                   pypi_0    pypi
pcre                      8.43                 h0a44026_0  
perl                      5.26.2            haec8ef5_1006    conda-forge
pip                       19.3.1                   py36_0  
pyglet                    1.3.2                    pypi_0    pypi
pyparsing                 2.4.6                    pypi_0    pypi
python                    3.6.10               h359304d_0  
python-dateutil           2.8.1                    pypi_0    pypi
readline                  7.0                  h1de35cc_5  
redis                     3.3.11                   pypi_0    pypi
scipy                     1.4.1                    pypi_0    pypi
setuptools                44.0.0                   py36_0  
six                       1.13.0                   pypi_0    pypi
sqlite                    3.30.1               ha441bb4_0  
timeout-decorator         0.4.1                    pypi_0    pypi
tk                        8.6.8                ha441bb4_0  
wheel                     0.33.6                   py36_0  
xz                        5.2.4                h1de35cc_4  
zlib                      1.2.11               h1de35cc_3

@hhdqirui
Copy link

Hi! Does anyone have a solution for this problem? I also have this problem.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
3 participants
@vittorione94 @hhdqirui @katUTC