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Spyder and rioxarray #22082

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eburrows95 opened this issue May 15, 2024 · 0 comments
Open

Spyder and rioxarray #22082

eburrows95 opened this issue May 15, 2024 · 0 comments

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@eburrows95
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Description

What steps will reproduce the problem?

cannot run spyder when rioxarray is also installed
conda create -n birdsongs -c conda-forge numpy pandas scipy pyproj geopandas shapely fiona gdal rasterio
conda activate birdsongs
conda install -c conda-forge rioxarray
** tried running python script, did not work **
conda install spyder-kernels=2.4
** submitted issue **

Traceback

Traceback (most recent call last):
  File "C:\Users\erica\anaconda3\Lib\site-packages\spyder\plugins\ipythonconsole\widgets\client.py", line 772, in _restart_thread_main
    self.shellwidget.kernel_manager.restart_kernel(
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\utils.py", line 30, in wrapped
    raise e
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\utils.py", line 27, in wrapped
    return loop.run_until_complete(future)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\nest_asyncio.py", line 90, in run_until_complete
    return f.result()
           ^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\asyncio\futures.py", line 203, in result
    raise self._exception.with_traceback(self._exception_tb)
  File "C:\Users\erica\anaconda3\Lib\asyncio\tasks.py", line 267, in __step
    result = coro.send(None)
             ^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\manager.py", line 541, in _async_restart_kernel
    await ensure_async(self.shutdown_kernel(now=now, restart=True))
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\utils.py", line 30, in wrapped
    raise e
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\utils.py", line 27, in wrapped
    return loop.run_until_complete(future)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\nest_asyncio.py", line 90, in run_until_complete
    return f.result()
           ^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\asyncio\futures.py", line 203, in result
    raise self._exception.with_traceback(self._exception_tb)
  File "C:\Users\erica\anaconda3\Lib\asyncio\tasks.py", line 267, in __step
    result = coro.send(None)
             ^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\manager.py", line 90, in wrapper
    raise e
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\manager.py", line 82, in wrapper
    out = await method(self, *args, **kwargs)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\manager.py", line 500, in _async_shutdown_kernel
    await ensure_async(self.request_shutdown(restart=restart))
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\utils.py", line 30, in wrapped
    raise e
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\utils.py", line 27, in wrapped
    return loop.run_until_complete(future)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\nest_asyncio.py", line 90, in run_until_complete
    return f.result()
           ^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\asyncio\futures.py", line 203, in result
    raise self._exception.with_traceback(self._exception_tb)
  File "C:\Users\erica\anaconda3\Lib\asyncio\tasks.py", line 267, in __step
    result = coro.send(None)
             ^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\manager.py", line 405, in _async_request_shutdown
    self._connect_control_socket()
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\manager.py", line 323, in _connect_control_socket
    self._control_socket = self._create_connected_socket("control")
                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\jupyter_client\connect.py", line 658, in _create_connected_socket
    sock = self.context.socket(socket_type)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\Users\erica\anaconda3\Lib\site-packages\zmq\sugar\context.py", line 258, in socket
    raise ZMQError(Errno.ENOTSUP)
zmq.error.ZMQError: Not supported

Versions

  • Spyder version: 5.4.3 (conda)
  • Python version: 3.11.4 64-bit
  • Qt version: 5.15.2
  • PyQt5 version: 5.15.7
  • Operating System: Windows 10

Dependencies

# Mandatory:
atomicwrites >=1.2.0                             :  1.4.0 (OK)
chardet >=2.0.0                                  :  4.0.0 (OK)
cloudpickle >=0.5.0                              :  2.2.1 (OK)
cookiecutter >=1.6.0                             :  1.7.3 (OK)
diff_match_patch >=20181111                      :  20200713 (OK)
intervaltree >=3.0.2                             :  3.1.0 (OK)
IPython >=7.31.1,<9.0.0,!=8.8.0,!=8.9.0,!=8.10.0 :  8.12.0 (OK)
jedi >=0.17.2,<0.19.0                            :  0.18.1 (OK)
jellyfish >=0.7                                  :  0.9.0 (OK)
jsonschema >=3.2.0                               :  4.17.3 (OK)
keyring >=17.0.0                                 :  23.13.1 (OK)
nbconvert >=4.0                                  :  6.5.4 (OK)
numpydoc >=0.6.0                                 :  1.5.0 (OK)
paramiko >=2.4.0                                 :  2.8.1 (OK)
parso >=0.7.0,<0.9.0                             :  0.8.3 (OK)
pexpect >=4.4.0                                  :  4.8.0 (OK)
pickleshare >=0.4                                :  0.7.5 (OK)
psutil >=5.3                                     :  5.9.0 (OK)
pygments >=2.0                                   :  2.15.1 (OK)
pylint >=2.5.0,<3.0                              :  2.16.2 (OK)
pylint_venv >=2.1.1                              :  2.3.0 (OK)
pyls_spyder >=0.4.0                              :  0.4.0 (OK)
pylsp >=1.7.2,<1.8.0                             :  1.7.2 (OK)
pylsp_black >=1.2.0                              :  1.2.1 (OK)
qdarkstyle >=3.0.2,<3.2.0                        :  3.0.2 (OK)
qstylizer >=0.2.2                                :  0.2.2 (OK)
qtawesome >=1.2.1                                :  1.2.2 (OK)
qtconsole >=5.4.2,<5.5.0                         :  5.4.2 (OK)
qtpy >=2.1.0                                     :  2.2.0 (OK)
rtree >=0.9.7                                    :  1.0.1 (OK)
setuptools >=49.6.0                              :  68.0.0 (OK)
sphinx >=0.6.6                                   :  5.0.2 (OK)
spyder_kernels >=2.4.3,<2.5.0                    :  2.4.3 (OK)
textdistance >=4.2.0                             :  4.2.1 (OK)
three_merge >=0.1.1                              :  0.1.1 (OK)
watchdog >=0.10.3                                :  2.1.6 (OK)
zmq >=22.1.0                                     :  23.2.0 (OK)

# Optional:
cython >=0.21                                    :  None (NOK)
matplotlib >=3.0.0                               :  3.7.1 (OK)
numpy >=1.7                                      :  1.24.3 (OK)
pandas >=1.1.1                                   :  1.5.3 (OK)
scipy >=0.17.0                                   :  1.10.1 (OK)
sympy >=0.7.3                                    :  1.11.1 (OK)

Environment

Environment 
# packages in environment at C:\Users\erica\anaconda3\envs\birdsongs:
#
# Name                    Version                   Build  Channel
affine                    2.4.0              pyhd8ed1ab_0    conda-forge
asttokens                 2.0.5              pyhd3eb1b0_0  
attrs                     23.2.0             pyh71513ae_0    conda-forge
aws-c-auth                0.7.20               h6823eb1_0    conda-forge
aws-c-cal                 0.6.12               hc83774a_0    conda-forge
aws-c-common              0.9.17               h2466b09_0    conda-forge
aws-c-compression         0.2.18               hc83774a_4    conda-forge
aws-c-event-stream        0.4.2               hc6c0aac_10    conda-forge
aws-c-http                0.8.1               hced5053_13    conda-forge
aws-c-io                  0.14.8               hebaacdb_0    conda-forge
aws-c-mqtt                0.10.4               hdafd9a4_2    conda-forge
aws-c-s3                  0.5.8                h7a83f0e_3    conda-forge
aws-c-sdkutils            0.1.16               hc83774a_0    conda-forge
aws-checksums             0.1.18               hc83774a_4    conda-forge
aws-crt-cpp               0.26.8              h4438f58_10    conda-forge
aws-sdk-cpp               1.11.267             h12f3f85_8    conda-forge
azure-core-cpp            1.11.1               h249a519_1    conda-forge
azure-identity-cpp        1.6.0                h91493d7_1    conda-forge
azure-storage-blobs-cpp   12.10.0              h91493d7_1    conda-forge
azure-storage-common-cpp  12.5.0               h91493d7_4    conda-forge
blosc                     1.21.5               hbd69f2e_1    conda-forge
branca                    0.7.2              pyhd8ed1ab_0    conda-forge
brotli                    1.1.0                hcfcfb64_1    conda-forge
brotli-bin                1.1.0                hcfcfb64_1    conda-forge
brotli-python             1.1.0           py312h53d5487_1    conda-forge
bzip2                     1.0.8                hcfcfb64_5    conda-forge
c-ares                    1.28.1               hcfcfb64_0    conda-forge
ca-certificates           2024.3.11            haa95532_0  
cairo                     1.18.0               h1fef639_0    conda-forge
certifi                   2024.2.2        py312haa95532_0  
cfitsio                   4.4.0                h9b0cee5_1    conda-forge
charset-normalizer        3.3.2              pyhd8ed1ab_0    conda-forge
click                     8.1.7           win_pyh7428d3b_0    conda-forge
click-plugins             1.1.1                      py_0    conda-forge
cligj                     0.7.2              pyhd8ed1ab_1    conda-forge
cloudpickle               2.2.1           py312haa95532_0  
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
comm                      0.2.1           py312haa95532_0  
contourpy                 1.2.1           py312h0d7def4_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
debugpy                   1.6.7           py312hd77b12b_0  
decorator                 5.1.1              pyhd3eb1b0_0  
executing                 0.8.3              pyhd3eb1b0_0  
expat                     2.6.2                h63175ca_0    conda-forge
fiona                     1.9.6           py312h95cbb4d_0    conda-forge
fmt                       10.2.1               h181d51b_0    conda-forge
folium                    0.16.0             pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_2    conda-forge
fontconfig                2.14.2               hbde0cde_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.51.0          py312he70551f_0    conda-forge
freetype                  2.12.1               hdaf720e_2    conda-forge
freexl                    2.0.0                h8276f4a_0    conda-forge
gdal                      3.8.5           py312hea5013e_5    conda-forge
geopandas                 0.14.4             pyhd8ed1ab_0    conda-forge
geopandas-base            0.14.4             pyha770c72_0    conda-forge
geos                      3.12.1               h1537add_0    conda-forge
geotiff                   1.7.1               hed9d743_16    conda-forge
hdf4                      4.2.15               h5557f11_7    conda-forge
hdf5                      1.14.3          nompi_h73e8ff5_101    conda-forge
icu                       73.2                 h63175ca_0    conda-forge
idna                      3.7                pyhd8ed1ab_0    conda-forge
intel-openmp              2024.1.0           h57928b3_965    conda-forge
ipykernel                 6.28.0          py312haa95532_0  
ipython                   8.20.0          py312haa95532_0  
jedi                      0.18.1          py312haa95532_1  
jinja2                    3.1.4              pyhd8ed1ab_0    conda-forge
joblib                    1.4.2              pyhd8ed1ab_0    conda-forge
jupyter_client            8.6.0           py312haa95532_0  
jupyter_core              5.5.0           py312haa95532_0  
kealib                    1.5.3                hd248416_0    conda-forge
kiwisolver                1.4.5           py312h0d7def4_1    conda-forge
krb5                      1.21.2               heb0366b_0    conda-forge
lcms2                     2.16                 h67d730c_0    conda-forge
lerc                      4.0.0                h63175ca_0    conda-forge
libabseil                 20240116.2      cxx17_h63175ca_0    conda-forge
libaec                    1.1.3                h63175ca_0    conda-forge
libarchive                3.7.2                h313118b_1    conda-forge
libblas                   3.9.0              22_win64_mkl    conda-forge
libboost-headers          1.85.0               h57928b3_0    conda-forge
libbrotlicommon           1.1.0                hcfcfb64_1    conda-forge
libbrotlidec              1.1.0                hcfcfb64_1    conda-forge
libbrotlienc              1.1.0                hcfcfb64_1    conda-forge
libcblas                  3.9.0              22_win64_mkl    conda-forge
libcrc32c                 1.1.2                h0e60522_0    conda-forge
libcurl                   8.7.1                hd5e4a3a_0    conda-forge
libdeflate                1.20                 hcfcfb64_0    conda-forge
libexpat                  2.6.2                h63175ca_0    conda-forge
libffi                    3.4.2                h8ffe710_5    conda-forge
libgdal                   3.8.5                h4f813f3_5    conda-forge
libglib                   2.80.2               h0df6a38_0    conda-forge
libgoogle-cloud           2.23.0               h68df31e_1    conda-forge
libgoogle-cloud-storage   2.23.0               hb581fae_1    conda-forge
libgrpc                   1.62.2               h5273850_0    conda-forge
libhwloc                  2.10.0          default_h2fffb23_1000    conda-forge
libiconv                  1.17                 hcfcfb64_2    conda-forge
libintl                   0.22.5               h5728263_2    conda-forge
libjpeg-turbo             3.0.0                hcfcfb64_1    conda-forge
libkml                    1.3.0             haf3e7a6_1018    conda-forge
liblapack                 3.9.0              22_win64_mkl    conda-forge
libnetcdf                 4.9.2           nompi_h07c049d_113    conda-forge
libpng                    1.6.43               h19919ed_0    conda-forge
libpq                     16.3                 hab9416b_0    conda-forge
libprotobuf               4.25.3               h503648d_0    conda-forge
libre2-11                 2023.09.01           hf8d8778_2    conda-forge
librttopo                 1.1.0               h94c4f80_15    conda-forge
libsodium                 1.0.18               h62dcd97_0  
libspatialindex           1.9.3                h39d44d4_4    conda-forge
libspatialite             5.1.0                hf13de1f_5    conda-forge
libsqlite                 3.45.3               hcfcfb64_0    conda-forge
libssh2                   1.11.0               h7dfc565_0    conda-forge
libtiff                   4.6.0                hddb2be6_3    conda-forge
libwebp-base              1.4.0                hcfcfb64_0    conda-forge
libxcb                    1.15                 hcd874cb_0    conda-forge
libxml2                   2.12.7               h283a6d9_0    conda-forge
libzip                    1.10.1               h1d365fa_3    conda-forge
libzlib                   1.2.13               hcfcfb64_5    conda-forge
lz4-c                     1.9.4                hcfcfb64_0    conda-forge
lzo                       2.10              hcfcfb64_1001    conda-forge
m2w64-gcc-libgfortran     5.3.0                         6    conda-forge
m2w64-gcc-libs            5.3.0                         7    conda-forge
m2w64-gcc-libs-core       5.3.0                         7    conda-forge
m2w64-gmp                 6.1.0                         2    conda-forge
m2w64-libwinpthread-git   5.0.0.4634.697f757               2    conda-forge
mapclassify               2.6.1              pyhd8ed1ab_0    conda-forge
markupsafe                2.1.5           py312he70551f_0    conda-forge
matplotlib-base           3.8.4           py312h26ecaf7_0    conda-forge
matplotlib-inline         0.1.6           py312haa95532_0  
minizip                   4.0.5                h5bed578_0    conda-forge
mkl                       2024.1.0           h66d3029_692    conda-forge
msys2-conda-epoch         20160418                      1    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
nest-asyncio              1.6.0           py312haa95532_0  
networkx                  3.3                pyhd8ed1ab_1    conda-forge
numpy                     1.26.4          py312h8753938_0    conda-forge
openjpeg                  2.5.2                h3d672ee_0    conda-forge
openssl                   3.3.0                hcfcfb64_0    conda-forge
packaging                 24.0               pyhd8ed1ab_0    conda-forge
pandas                    2.2.2           py312h2ab9e98_0    conda-forge
parso                     0.8.3              pyhd3eb1b0_0  
pcre2                     10.43                h17e33f8_0    conda-forge
pillow                    10.3.0          py312h6f6a607_0    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pixman                    0.43.4               h63175ca_0    conda-forge
platformdirs              3.10.0          py312haa95532_0  
poppler                   24.04.0              h747fd5a_0    conda-forge
poppler-data              0.4.12               hd8ed1ab_0    conda-forge
postgresql                16.3                 h7f155c9_0    conda-forge
proj                      9.4.0                he13c7e8_1    conda-forge
prompt-toolkit            3.0.43          py312haa95532_0  
prompt_toolkit            3.0.43               hd3eb1b0_0  
psutil                    5.9.0           py312h2bbff1b_0  
pthread-stubs             0.4               hcd874cb_1001    conda-forge
pthreads-win32            2.9.1                hfa6e2cd_3    conda-forge
pure_eval                 0.2.2              pyhd3eb1b0_0  
pygments                  2.15.1          py312haa95532_1  
pyparsing                 3.1.2              pyhd8ed1ab_0    conda-forge
pyproj                    3.6.1           py312h616b599_6    conda-forge
pysocks                   1.7.1              pyh0701188_6    conda-forge
python                    3.12.3          h2628c8c_0_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-tzdata             2024.1             pyhd8ed1ab_0    conda-forge
python_abi                3.12                    4_cp312    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
pywin32                   305             py312h2bbff1b_0  
pyzmq                     25.1.2          py312hd77b12b_0  
rasterio                  1.3.10          py312h7f7071e_0    conda-forge
re2                       2023.09.01           hd3b24a8_2    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rioxarray                 0.15.5             pyhd8ed1ab_0    conda-forge
rtree                     1.2.0           py312h72b5f30_0    conda-forge
scikit-learn              1.4.2           py312hcacafb1_0    conda-forge
scipy                     1.13.0          py312h1f4e10d_1    conda-forge
setuptools                69.5.1             pyhd8ed1ab_0    conda-forge
shapely                   2.0.4           py312h7d70906_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.2.0                hfb803bf_1    conda-forge
snuggs                    1.4.7                      py_0    conda-forge
spdlog                    1.13.0               h64d2f7d_0    conda-forge
spyder-kernels            2.4.4           py312haa95532_0  
sqlite                    3.45.3               hcfcfb64_0    conda-forge
stack_data                0.2.0              pyhd3eb1b0_0  
tbb                       2021.12.0            h91493d7_0    conda-forge
threadpoolctl             3.5.0              pyhc1e730c_0    conda-forge
tiledb                    2.23.0               h5657395_0    conda-forge
tk                        8.6.13               h5226925_1    conda-forge
tornado                   6.3.3           py312h2bbff1b_0  
traitlets                 5.7.1           py312haa95532_0  
tzdata                    2024a                h0c530f3_0    conda-forge
ucrt                      10.0.22621.0         h57928b3_0    conda-forge
uriparser                 0.9.8                h5a68840_0    conda-forge
urllib3                   2.2.1              pyhd8ed1ab_0    conda-forge
vc                        14.3                hcf57466_18    conda-forge
vc14_runtime              14.38.33130         h82b7239_18    conda-forge
vs2015_runtime            14.38.33130         hcb4865c_18    conda-forge
wcwidth                   0.2.5              pyhd3eb1b0_0  
wheel                     0.43.0             pyhd8ed1ab_1    conda-forge
win_inet_pton             1.1.0              pyhd8ed1ab_6    conda-forge
xarray                    2024.5.0           pyhd8ed1ab_0    conda-forge
xerces-c                  3.2.5                h63175ca_0    conda-forge
xorg-libxau               1.0.11               hcd874cb_0    conda-forge
xorg-libxdmcp             1.1.3                hcd874cb_0    conda-forge
xyzservices               2024.4.0           pyhd8ed1ab_0    conda-forge
xz                        5.2.6                h8d14728_0    conda-forge
zeromq                    4.3.5                hd77b12b_0  
zlib                      1.2.13               hcfcfb64_5    conda-forge
zstd                      1.5.6                h0ea2cb4_0    conda-forge
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