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Blast-Assignment.rtf
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Blast-Assignment.rtf
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{\rtf1\ansi\ansicpg1252\cocoartf2759
\cocoatextscaling0\cocoaplatform0{\fonttbl\f0\fswiss\fcharset0 Helvetica;\f1\fmodern\fcharset0 Courier;}
{\colortbl;\red255\green255\blue255;\red255\green255\blue255;\red0\green0\blue0;}
{\*\expandedcolortbl;;\cssrgb\c100000\c100000\c100000;\cssrgb\c0\c0\c0;}
\margl1440\margr1440\vieww38200\viewh21600\viewkind0
\pard\tx720\tx1440\tx2160\tx2880\tx3600\tx4320\tx5040\tx5760\tx6480\tx7200\tx7920\tx8640\pardirnatural\partightenfactor0
\f0\fs18 \cf0 Fasta nt query on Homo sapiens with gaps cost 1,-2 and 4, -5:\
\
\
>Fasta nt sequence\
\pard\pardeftab720\partightenfactor0
\f1 \cf0 \cb2 \expnd0\expndtw0\kerning0
\outl0\strokewidth0 \strokec3 CCTGTAATCCCAGCTACTCTAATGCTAAGGTGAGAGGATCACTTGAGCCCAGGAGGTCGAGGCTGCAGTG\
AGCCATGATCATGCCACTGCACTCCAGTCTGGGCAACAGTGTGAGACCCTCTCTCAAACAAAAGCAGAAA\
CCTCAGACAAGTAGATCATTCAAAATTGGTAAATCCAAAAGGCAATTCTAGGTGTGTTTGGATCCACAAG\
CCTCCAGTAAGTGACCTAACCAGGGAGGTAAAGTAAGGTGTCAGCATGGGTCCTGGCCCTGCCATGAGAC\
AGGAAGAAGAGAGAGCAGGTGTTTCTCTGAGGTTGCTGGGGATGATATAATAGAACTGAAACTCTCAGCC\
CTTTCCCTGGAGAAGCACAAAATGCTGCCTTGGATGGTATGTGCCAGATAAGACACATGAGGAGCCAGGC\
ACAGTGGCTCATGCCTGTAATCCCAGCAATTTGGGAGGCTGAAGCAGGAGGATTGCTTGAGCCCAGGAGT\
TCGAGATCAGCTAGGCAACATGGTAAGACATGAACTCTCCAAAAAAATTAGCCAGGCATGTTGTTCCGCA\
CCTTTAGTCCCAGCTACTCGGGAGGCCGAGGTGAGAAGATCATTTGAGCCCAGGAGGTTGAGGATGCAGT\
GAGCCATGATTGCACCACTGCATTCCAGCCTGGATGACAGAGTGAGATCCTGTCTCAAAAAGCAAACACA\
CACACACACGAAAGCAAGAAGCAAGACAGCTGTGGAATTCCAGAGATAGGAGACAGGCAAAGAACCTGAC\
CTGGTGCAACGAAGATAAAGGTAACGGAGCCAGATGAGGAGGCTTAAATGCCTTACAAGAGTTAGGCGTT\
CAAGTTACAAGTCTTGGCCAGGCGCGGTGGCTCACGCTTGTAATCCCAGCACTTTGGGAGGCTGAGGCAG\
GCGGATCACGAGGTCAGGAGATCAAGACCATTCTGGCCAACATGATGAAACCCCGTCTCTACTAAAAATA\
CAAAAAATTAGCCCGGCGTGGTGGCATGTGCATGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAAT\
CACTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCACACCACTGTACTCCAACCTGGTGACAGA\
GTGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAGAGTTCAGTCTTGATGGGCTTCTCTGTGAAGAGACC\
CTAAAGGATTTGAGCAGAGAAAAGACCAGTTGAAAGCTATGTTTAGGCCAGATGCAGTGACTTACACCTG\
TAATCCCAGCAATTTGGTAGGCCAGGGCAGGAGGAGCCCAGGAGTTCAAGACCAGCCTGAGCAAATAGCA\
AGACCCCATGTCTACAAAATTTTTTTTAATTAGCTGGGAATGATGACGCATGCCTGCGATACCAGCTACT\
CAGGAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGGTCAAGGCTAAAGTCAGCCACGATCAAGCCAC\
TGCATTCCAGCCTGGGTGGCAGAGTGAGACCCTGTTTCAAAAAGAAAGAAAGAAAAAAAAAAGCTATGTT\
TAACCTGATAGAGGATAGAGTGTAGGGTGGCATGGGGCAAGAGCTATGAGAGTGTAATAGGGAGGCTGAG\
AACACCCTCATGGGAGGTGATGAGGGATTCAATGTGGGGAGGAACTCACAGATTCAGGAGCCACTTAAGT\
AAAAGTTGAGAAAATTTGATGTCTTTCTGGGTGCAAGATTAAAGCTTTCCAGCCTGGCTGACCTAGTAGA\
TGTTATTTTTTCCACTGATGGAGACAAGAAAGTCAAAGGGAGATGAATTTGAGGAATATTGTGAGATGAG\
CGTGAGGCTGGTTGAATTTGAGCTAAAACCAAGATATTCAAGTGAACATAGGATCTGGAGGCATCAGTTT\
TGGAGGCAACTTCTGGCAGAGTGAAGAGCTGATTCCCTGAAAGGGGATGGGCATTGTTAGGAAAGCCACA\
GGGAGAAAAAAAGACCAAGGCTTGAATCTTGGAAAATGCTACACTCCATATCAGACCATCCACTAGCACT\
CTTCCACACTCTACTGTAATCCCAATTCACCAGACACTCCAACACCTCTATCCCTTCCTGCTGCTGAGGG\
AACTTATAAATATTGAGTTACTCTGAGCTGGTCTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCT\
TATTGCCCGGGTTGGAGTACAGTGGCACGATCTCAGCTCACCACAACCTCCACCTCCCAGGTTCAAGTAA\
TTCTCCTGCCTCAGCCCCCCGAGTAGCTGAGATTATAGGCATGCGCCACCACGCCCGGCTAATTTTGTAT\
TTTTAGCAGAGTTGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTTCCGACCTCAGGTGATCCACC\
AGCCTCAGCCTCTCAACATGCTGGGATTTCAGGCGTGAACCACCGCGCCCGGCCTCTGAGCCAGTCTTAA\
CACCTAGTCAGCTTGTTCTCCCATTAAATCCTGAGAACAGACCTGTGAGGTAGATCTTCCAGACCCATTT\
TATACAGGCAAAACTGAGACCCTGAGAGATGAATCAATTCATAGCATGTGAAGTAGTTTCCCTGATTTCC\
ATTCAGTAGGGCACCTACTATGTGCCAAGATTGGGGAAAATAATGATATTGGGCCCTACCCTCTAGAGGC\
CACAATCTGGACAGAGATAAGGTAGGCACGTAAATAAGGATAAAGTAAGGTGAAGCCCAGCAGCTCCAGG\
AGACGTAGAGATAAGGTCTTCTACAGTCCAAAGGGCTGAAGGCATCACAGGCAGCTTCCTGAAGGAGGTA\
GGCACTGATGCAAGTCAGGCCTGGAGGATCTGGGGGGACGTGCTATAACAATGACTCTTGTCCCACAGGT\
ACTGTGTCCGGGGATTGCAGCCGTTCGGGCAGGGGGCAAGGGCTGCTGTGGTGCTGGGTGCTGTGGAAAC\
CGCTGCAGGGTAAGATCCAGATTAAGAAGGAATTCAGGGCTGGGGGTGGTGTCTCATGCCTGTAATCCCA\
ACACTTTAGCAGGCTGAGGTGGGAGTACGGCTTGAGCCAGGAGTTCTAGACCAGCCCAGGAAACATGGCA\
AGATCCCTATCTCTACTAACAATACAAAAATTAGCCGGGCGTGGTGGCAAGCACCTGCAATCTCGGCTAC\
TTGGGAGGCTGAGGTGGGAGGGCCGCTTGAGCCCAGGAGGTCCAGGCTGCAGTAAGCAGTGATTTAAAAA\
AAAAAAAAAAAAAAAAAAAAGAAGAGAAAAGATACAGAAATTAGCCAGGCGTGGTGGCGGGCACCTGTAA\
TCCCAGCTACTCAGGAGGCTGAGGCAGGAAAATCACTTGAACCCTGGAGGCAGAGGTTGCAATGGGCCGA\
GATCACACCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAAAAGAAAAGAAAAGA\
TACAGAAATTAGCCTGGTGTGGTGGTGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAT\
TACGGTGAGCCAAGATTGTGCCATTGCATTCCAGCCTGGGCAACAAGAGCAAAACTCCGCCTCAAAAAAA\
ATGTATTTTTATTTTATTTTACATTTATTTATCTTATTTATTTTAGACATAGTCTTGGTCTGTCACCCAG\
GCTGGAGTACAGTGGCACGATCTTGGCTCACTGCAGCTTCCGCCTCCCTAGTTCAAGCCATTCTTGTTCT\
TCCAGCCTCCCAAGTAGCTGGGATTACAGGCGCCTGCCACCACACCCAGCTAATTTTTATATTTTTAGTA\
GAGACGGGGTTTCACTGTTGGCCAGAGTGGTCTGAAACTCCTGGCCTCAGGCGATCTGCCCCCCTTGGCC\
TCCCAAAGTGCTGGGATTACAGGTGTGAGATATCGTGCCCAGCCTCGAGTCAGGTTTAAAATAAATTTCC\
CTTCAAACCCCGGGCTTGCAGTTAGGCTAACCTGAAAGCCAGCGGCCGCCGAGATTCACTGGGGTTGTAG\
TTCCCCCCTCTCCCCTTCACCCGCCTACCCCTCAGGATCATTGAGATCTGAGATTTGTGGGTGCCAGGGA\
AGGGTGGGGTGGGGCCTGGGAGTCCGCAGAGGAGCTTGTGTAGCTAGGAATTCCATAGAGAGTGCTGTGG\
TTCTGCAAGGACAGGTGCAGAAACAGAGTCCGAATTTCTAATTTTTTTTTTTTTTTTTCTTTTTGAGACG\
GGGTCTGGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCATTGCAACCTCCGCCTCCCA\
\pard\tx720\tx1440\tx2160\tx2880\tx3600\tx4320\tx5040\tx5760\tx6480\tx7200\tx7920\tx8640\pardirnatural\partightenfactor0
\f0 \cf0 \cb1 \kerning1\expnd0\expndtw0 \outl0\strokewidth0 \
\
\pard\tx720\tx1440\tx2160\tx2880\tx3600\tx4320\tx5040\tx5760\tx6480\tx7200\tx7920\tx8640\pardirnatural\partightenfactor0
\cf0 Fasta pr query on Homo sapiens with 2 scoring parameters separately \'93PAM30\'94 and \'93BLOSSUM62\'94:\
\pard\tx720\tx1440\tx2160\tx2880\tx3600\tx4320\tx5040\tx5760\tx6480\tx7200\tx7920\tx8640\pardirnatural\partightenfactor0
\cf0 \
>Faste pr sequence\
MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHELENCSVIEGHLQILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYALVIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIGPLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSVYVPDEWEVSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENKAPESEELEMEFEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIPYTHMNGGKKNGRILTLPRSNPS\
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Report 4 outputs with first hit, its percentage identity, and sequence pair as results. Paste 4 outputs in a word document called Blast-Assignment.doc and upload to Github Repository.\
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}