Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

mgmanysearch errors out with no arguments #17

Open
ctb opened this issue Apr 8, 2024 · 0 comments
Open

mgmanysearch errors out with no arguments #17

ctb opened this issue Apr 8, 2024 · 0 comments

Comments

@ctb
Copy link
Contributor

ctb commented Apr 8, 2024

% sourmash scripts mgmanysearch

== This is sourmash version 4.8.7. ==
== Please cite Brown and Irber (2016), doi:10.21105/joss.00027. ==

Traceback (most recent call last):
  File "/home/ctbrown/.conda/envs/sarco/bin/sourmash", line 11, in <module>
    sys.exit(main())
             ^^^^^^
  File "/home/ctbrown/.conda/envs/sarco/lib/python3.12/site-packages/sourmash/__main__.py", line 20, in main
    retval = mainmethod(args)
             ^^^^^^^^^^^^^^^^
  File "/home/ctbrown/.conda/envs/sarco/lib/python3.12/site-packages/sourmash_plugin_containment_search.py", line 116, in main
    return mg_many_search(args.queries, args.against,
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/ctbrown/.conda/envs/sarco/lib/python3.12/site-packages/sourmash_plugin_containment_search.py", line 271, in mg_many_search
    for query_filename in query_filenames:
TypeError: 'NoneType' object is not iterable
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant