fix: option flag " --list-conda-envs " throws TypeError when used in snakemake v6.10.0 #1233
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Super Brief
When using --list-conda-envs in 6.10.0, the following error is thrown:
Less Brief
Snakefile
snakemake --conda-frontend mamba --use-conda --conda-prefix /snakemake_envs/ -c 1 --list-conda-envs --verbose -s Snakefile all
Running the same command w/out the --list-conda-envs flag. It runs.
snakemake --conda-frontend mamba --use-conda --conda-prefix locus/data/external_data/research_experiments/snakemake_envs/ -c 1 --verbose -s Snakefile all
Running with flag after minor changes applied -- environments list as expected.
snakemake --conda-frontend mamba --use-conda --conda-prefix /locus/data/external_data/research_experiments/snakemake_envs/ -c 1 --list-conda-envs -s Snakefile all
Other jobs
QC
I Ran some workflows using conda, and there were no problems. And the flag now works as advertised.
docs/
) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).