From df46ddb37022b291a4feca22fd0fbcf8773e7d03 Mon Sep 17 00:00:00 2001 From: Connor Jops Date: Tue, 11 Jan 2022 12:39:54 -0800 Subject: [PATCH] fix: --conda-frontend value not passed on to cluster jobs (#1317) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * fix: --conda-frontend value not passed on to cluster jobs * fmt Co-authored-by: Johannes Köster --- snakemake/executors/__init__.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/snakemake/executors/__init__.py b/snakemake/executors/__init__.py index cf474a2f8..5d13cc3a6 100644 --- a/snakemake/executors/__init__.py +++ b/snakemake/executors/__init__.py @@ -293,6 +293,10 @@ def get_additional_args(self): additional += " --shadow-prefix {} ".format(self.workflow.shadow_prefix) if self.workflow.use_conda: additional += " --use-conda " + if self.workflow.conda_frontend: + additional += " --conda-frontend {} ".format( + self.workflow.conda_frontend + ) if self.workflow.conda_prefix: additional += " --conda-prefix {} ".format(self.workflow.conda_prefix) if self.workflow.conda_base_path and self.assume_shared_fs: