From 90bc88b84282b477f481e368ad657056e131cbdc Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Johannes=20K=C3=B6ster?= <johannes.koester@tu-dortmund.de>
Date: Tue, 1 Mar 2022 16:21:10 +0100
Subject: [PATCH] fix: add local marker for input files in cufflinks example.
 fixes issue #1362

---
 examples/cufflinks/Snakefile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/examples/cufflinks/Snakefile b/examples/cufflinks/Snakefile
index 858b28b2d..92add0a3e 100644
--- a/examples/cufflinks/Snakefile
+++ b/examples/cufflinks/Snakefile
@@ -22,7 +22,7 @@ rule all:
 
 rule assembly:
     input:
-        'mapped/{sample}.bam'
+        local('mapped/{sample}.bam')
     output:
         'assembly/{sample}/transcripts.gtf',
         dir='assembly/{sample}'