fix: better error messages in case of missing files after latency per…

…iod (#1528) * fix: better error messages in case of missing files after latency period * fix syntax error
snakemake · Mar 30, 2022 · 5b394c0 · 5b394c0
1 parent 950d8ba
commit 5b394c0
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 7 deletions.
diff --git a/snakemake/dag.py b/snakemake/dag.py
@@ -502,10 +502,7 @@ def check_and_touch_output(
                 )
             except IOError as e:
                 raise MissingOutputException(
-                    str(e) + "\nThis might be due to "
-                    "filesystem latency. If that is the case, consider to increase the "
-                    "wait time with --latency-wait."
-                    + "\nJob id: {jobid}".format(jobid=job.jobid),
+                    str(e),
                     rule=job.rule,
                     jobid=self.jobid(job),
                 )

diff --git a/snakemake/io.py b/snakemake/io.py
@@ -824,10 +824,12 @@ def get_missing():
             if not get_missing():
                 return
             time.sleep(1)
+        missing = "\n".join(get_missing())
         raise IOError(
-            "Missing files after {} seconds:\n{}".format(
-                latency_wait, "\n".join(get_missing())
-            )
+            f"Missing files after {latency_wait} seconds. This might be due to "
+            "filesystem latency. If that is the case, consider to increase the "
+            "wait time with --latency-wait:\n"
+            f"{missing}"
         )