From 41175b3001ff59db5d7ea8bf91354decea04f74d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Johannes=20K=C3=B6ster?= <johannes.koester@tu-dortmund.de>
Date: Tue, 31 May 2022 13:41:52 +0200
Subject: [PATCH] fix: set channel priority in container system wide (#1690)

---
 Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Dockerfile b/Dockerfile
index d94487f30..da1f087bb 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -8,7 +8,7 @@ ENV SHELL /bin/bash
 RUN install_packages wget curl bzip2 ca-certificates gnupg2 squashfs-tools git
 RUN /bin/bash -c "curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh > mambaforge.sh && \
     bash mambaforge.sh -b -p /opt/conda && \
-    conda config --set channel_priority strict && \
+    conda config --system --set channel_priority strict && \
     rm mambaforge.sh"
 RUN /bin/bash -c "mamba create -q -y -c conda-forge -c bioconda -n snakemake snakemake snakemake-minimal --only-deps && \
     source activate snakemake && \