diff --git a/Dockerfile b/Dockerfile index d94487f30..da1f087bb 100644 --- a/Dockerfile +++ b/Dockerfile @@ -8,7 +8,7 @@ ENV SHELL /bin/bash RUN install_packages wget curl bzip2 ca-certificates gnupg2 squashfs-tools git RUN /bin/bash -c "curl -L https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh > mambaforge.sh && \ bash mambaforge.sh -b -p /opt/conda && \ - conda config --set channel_priority strict && \ + conda config --system --set channel_priority strict && \ rm mambaforge.sh" RUN /bin/bash -c "mamba create -q -y -c conda-forge -c bioconda -n snakemake snakemake snakemake-minimal --only-deps && \ source activate snakemake && \