From 2104e10d1d2c5e0f368e9c0fe95cc50f9d4847f1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Johannes=20K=C3=B6ster?= Date: Fri, 13 Aug 2021 11:57:52 +0200 Subject: [PATCH] fix: linting of remote snakefiles (#1131) --- snakemake/linting/snakefiles.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/snakemake/linting/snakefiles.py b/snakemake/linting/snakefiles.py index f31d63022..9f8b77bd2 100644 --- a/snakemake/linting/snakefiles.py +++ b/snakemake/linting/snakefiles.py @@ -15,7 +15,7 @@ def item_desc_json(self, snakefile): return {"snakefile": snakefile} def read_item(self, snakefile): - return open(snakefile).read() + return self.workflow.sourcecache.open(snakefile).read() def lint_absolute_paths(self, snakefile, regex=re.compile(ABS_PATH_PATTERN)): for match in regex.finditer(snakefile):