{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":234527100,"defaultBranch":"master","name":"dna-seq-varlociraptor","ownerLogin":"snakemake-workflows","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-01-17T10:34:54.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/28868283?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1716971539.0","currentOid":""},"activityList":{"items":[{"before":"e5dd722b1a406953d83088ff67160424455fa741","after":"456349078266253452c9550d5def213bf4c4c49c","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-29T15:07:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"define and use get_aligner func","shortMessageHtmlLink":"define and use get_aligner func"}},{"before":null,"after":"cf8ef5e822a39e7b05c71f85514f613581f6485d","ref":"refs/heads/fxwiegand-patch-1","pushedAt":"2024-05-29T08:32:19.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"fxwiegand","name":"Felix Wiegand","path":"/fxwiegand","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/39430842?s=80&v=4"},"commit":{"message":"ci: Add fetch-depth: 0 to linting job","shortMessageHtmlLink":"ci: Add fetch-depth: 0 to linting job"}},{"before":"e78e39690cf879572ed6bb51a58f069c573bac06","after":"e5dd722b1a406953d83088ff67160424455fa741","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-28T11:36:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"use default workflow config and scenario and add purity value to samples sheet","shortMessageHtmlLink":"use default workflow config and scenario and add purity value to samp…"}},{"before":"bb1b9183d58f1d35fd08d21521d73115fac39e8e","after":"7364276c9d7d34842c91bb0bbfba4f21b81e3cbd","ref":"refs/heads/feat/add-maftools-output","pushedAt":"2024-05-28T10:40:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlaehnemann","name":"David Laehnemann","path":"/dlaehnemann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1379875?s=80&v=4"},"commit":{"message":"feat: make freebayes configurable via config.params.freebayes.extra","shortMessageHtmlLink":"feat: make freebayes configurable via config.params.freebayes.extra"}},{"before":"4c3ad2fabdb4d50723fd08bf454f8e367bb9d5e3","after":"d1214f045ad06f35f8f9afbead1b5bfe69901124","ref":"refs/heads/fix/download_sra","pushedAt":"2024-05-28T09:39:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"update readme","shortMessageHtmlLink":"update readme"}},{"before":null,"after":"4c3ad2fabdb4d50723fd08bf454f8e367bb9d5e3","ref":"refs/heads/fix/download_sra","pushedAt":"2024-05-28T07:06:11.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"fix: download sra","shortMessageHtmlLink":"fix: download sra"}},{"before":"3396ed67f1b00d1b91ecaa1a2adb8579ee63a6cd","after":"5a62edadff95a5666ebfbfc0822fa3511c354da6","ref":"refs/heads/release-please--branches--master","pushedAt":"2024-05-23T07:27:01.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"chore(master): release 5.7.0","shortMessageHtmlLink":"chore(master): release 5.7.0"}},{"before":"15ce6095fcdbdc70927cb5a17db53f17b221686d","after":"82eb4dd193db0fd228a286534e91a4eb69476b62","ref":"refs/heads/master","pushedAt":"2024-05-23T07:26:31.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"feat: Add improved visualization for clinical significance (#301)\n\n* Create clinical_significance.js\r\n\r\n* Update variant-calls-template.datavzrd.yaml\r\n\r\n* Update datavzrd.smk\r\n\r\n* fix missing column\r\n\r\n* adjust coloring\r\n\r\n---------\r\n\r\nCo-authored-by: Felix Mölder ","shortMessageHtmlLink":"feat: Add improved visualization for clinical significance (#301)"}},{"before":null,"after":"1c004c2271e2248ddb4afb399a756f57a8a77926","ref":"refs/heads/feat/mutational_signatures","pushedAt":"2024-05-16T07:22:01.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"initial commit","shortMessageHtmlLink":"initial commit"}},{"before":"15ce6095fcdbdc70927cb5a17db53f17b221686d","after":"3396ed67f1b00d1b91ecaa1a2adb8579ee63a6cd","ref":"refs/heads/release-please--branches--master","pushedAt":"2024-05-15T08:50:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"chore(master): release 5.7.0","shortMessageHtmlLink":"chore(master): release 5.7.0"}},{"before":null,"after":"15ce6095fcdbdc70927cb5a17db53f17b221686d","ref":"refs/heads/release-please--branches--master","pushedAt":"2024-05-15T08:50:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"feat: add linkouts to non-coding tables (#302)\n\n* refactor linkouts\r\n\r\n* add linkouts to non-coding table","shortMessageHtmlLink":"feat: add linkouts to non-coding tables (#302)"}},{"before":"1232eba024c8f11762fd5fd845eb49ee3326ded8","after":null,"ref":"refs/heads/feat/generalize_report","pushedAt":"2024-05-15T08:49:42.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"}},{"before":"f558487fa3276aed8961a45613afe797d8b59733","after":"15ce6095fcdbdc70927cb5a17db53f17b221686d","ref":"refs/heads/master","pushedAt":"2024-05-15T08:49:41.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"feat: add linkouts to non-coding tables (#302)\n\n* refactor linkouts\r\n\r\n* add linkouts to non-coding table","shortMessageHtmlLink":"feat: add linkouts to non-coding tables (#302)"}},{"before":"170468db827404d7c8e19ff6272143c879580c4d","after":"1232eba024c8f11762fd5fd845eb49ee3326ded8","ref":"refs/heads/feat/generalize_report","pushedAt":"2024-05-15T08:04:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"fmt","shortMessageHtmlLink":"fmt"}},{"before":"f96f881a2149775716a5543e3cbf3dc7161a98a6","after":"170468db827404d7c8e19ff6272143c879580c4d","ref":"refs/heads/feat/generalize_report","pushedAt":"2024-05-15T07:59:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"typo","shortMessageHtmlLink":"typo"}},{"before":"f558487fa3276aed8961a45613afe797d8b59733","after":"f96f881a2149775716a5543e3cbf3dc7161a98a6","ref":"refs/heads/feat/generalize_report","pushedAt":"2024-05-14T10:33:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"fixes","shortMessageHtmlLink":"fixes"}},{"before":"a456db290b0b345a05afe775adbe45833112c34d","after":"0f6ea40ad0645163ed66026407659d627223348f","ref":"refs/heads/feat/purity-estimation","pushedAt":"2024-05-13T14:10:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dlaehnemann","name":"David Laehnemann","path":"/dlaehnemann","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1379875?s=80&v=4"},"commit":{"message":"add contamination estimation input function","shortMessageHtmlLink":"add contamination estimation input function"}},{"before":null,"after":"f558487fa3276aed8961a45613afe797d8b59733","ref":"refs/heads/feat/generalize_report","pushedAt":"2024-05-13T10:50:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"FelixMoelder","name":"Felix Mölder","path":"/FelixMoelder","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/20491578?s=80&v=4"},"commit":{"message":"chore(master): release 5.6.0 (#298)\n\nCo-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>","shortMessageHtmlLink":"chore(master): release 5.6.0 (#298)"}},{"before":"d1173aca6d54428906864bf6934a8b470cfae5a1","after":"e78e39690cf879572ed6bb51a58f069c573bac06","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-08T13:05:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"fmt","shortMessageHtmlLink":"fmt"}},{"before":"0f6b0111cefc6053e7ada69227110586a6422c30","after":"d1173aca6d54428906864bf6934a8b470cfae5a1","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-08T12:46:59.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"Merge branch 'master' into allow-pangenome-mapping","shortMessageHtmlLink":"Merge branch 'master' into allow-pangenome-mapping"}},{"before":"af6ecaf3b5c36729447f3c701fe57ec7a944a6bc","after":"0f6b0111cefc6053e7ada69227110586a6422c30","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-08T12:45:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"provide example event, scenario and sample","shortMessageHtmlLink":"provide example event, scenario and sample"}},{"before":"5953c14828990b7aec82ac8d5b58ae670f418055","after":"af6ecaf3b5c36729447f3c701fe57ec7a944a6bc","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-08T12:42:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"upload example config and fix typo in vembrane expression","shortMessageHtmlLink":"upload example config and fix typo in vembrane expression"}},{"before":"5a45b64bf8dd4df352215a29642d3174240f5cc2","after":"5953c14828990b7aec82ac8d5b58ae670f418055","ref":"refs/heads/allow-pangenome-mapping","pushedAt":"2024-05-08T12:37:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"huzuner","name":"Hamdiye Uzuner","path":"/huzuner","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/67070119?s=80&v=4"},"commit":{"message":"add index as input to filter_by_annotation rule to avoid index not found errors","shortMessageHtmlLink":"add index as input to filter_by_annotation rule to avoid index not fo…"}},{"before":"ce195e195a47cc0a49b59679e101c6971856ba38","after":null,"ref":"refs/heads/release-please--branches--master","pushedAt":"2024-05-04T06:48:04.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"johanneskoester","name":"Johannes Köster","path":"/johanneskoester","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1858646?s=80&v=4"}},{"before":"0ad923fc3f4f5b36da714925194410803786125a","after":"f558487fa3276aed8961a45613afe797d8b59733","ref":"refs/heads/master","pushedAt":"2024-05-04T06:48:03.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"johanneskoester","name":"Johannes Köster","path":"/johanneskoester","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1858646?s=80&v=4"},"commit":{"message":"chore(master): release 5.6.0 (#298)\n\nCo-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>","shortMessageHtmlLink":"chore(master): release 5.6.0 (#298)"}},{"before":"9c14bce42fd3c4ae04b479214dc198af437af7a3","after":"ce195e195a47cc0a49b59679e101c6971856ba38","ref":"refs/heads/release-please--branches--master","pushedAt":"2024-05-04T06:46:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"chore(master): release 5.6.0","shortMessageHtmlLink":"chore(master): release 5.6.0"}},{"before":"6cc658aeed60fe09ff7a9ab3bb10b8a94569343a","after":"0ad923fc3f4f5b36da714925194410803786125a","ref":"refs/heads/master","pushedAt":"2024-05-04T06:46:09.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"johanneskoester","name":"Johannes Köster","path":"/johanneskoester","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1858646?s=80&v=4"},"commit":{"message":"fix: use latest datavzrd wrapper that integrates template rendering (#300)\n\n* fix: use latest datavzrd wrapper that integrates template rendering\r\n\r\n* adapt rules and templates\r\n\r\n* use yte\r\n\r\n* fix add __use_yte__\r\n\r\n* lookup desc in params\r\n\r\n* fmt","shortMessageHtmlLink":"fix: use latest datavzrd wrapper that integrates template rendering (#…"}},{"before":"283df1da2d00b84e13f4d306e9ef6f8f22df7066","after":null,"ref":"refs/heads/fix/datavzrd-integrated-template-rendering","pushedAt":"2024-05-04T06:46:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"johanneskoester","name":"Johannes Köster","path":"/johanneskoester","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1858646?s=80&v=4"}},{"before":"cf98d1d4f08e59da7af27f5428d847259b0dc0da","after":"283df1da2d00b84e13f4d306e9ef6f8f22df7066","ref":"refs/heads/fix/datavzrd-integrated-template-rendering","pushedAt":"2024-05-03T11:37:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"johanneskoester","name":"Johannes Köster","path":"/johanneskoester","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1858646?s=80&v=4"},"commit":{"message":"fmt","shortMessageHtmlLink":"fmt"}},{"before":"0986aa6210df08babe329a1623a71a6894be11cc","after":"cf98d1d4f08e59da7af27f5428d847259b0dc0da","ref":"refs/heads/fix/datavzrd-integrated-template-rendering","pushedAt":"2024-05-03T09:18:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"johanneskoester","name":"Johannes Köster","path":"/johanneskoester","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1858646?s=80&v=4"},"commit":{"message":"lookup desc in params","shortMessageHtmlLink":"lookup desc in params"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEVxfD8gA","startCursor":null,"endCursor":null}},"title":"Activity · snakemake-workflows/dna-seq-varlociraptor"}