Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update Spectral Library Bug #2291

Open
nbollis opened this issue Jun 29, 2023 · 0 comments
Open

Update Spectral Library Bug #2291

nbollis opened this issue Jun 29, 2023 · 0 comments

Comments

@nbollis
Copy link
Contributor

nbollis commented Jun 29, 2023

If the update spectral library option is checked, but no library is present, the search will continue as usual, but throw an exception when trying to update the library.

This exception does not cause the program to crash, but rather hang indefinitely during the 'Writing PSM results' component of the search task.

The results.txt file contained the following error after forcing the software to close.
MetaMorpheus: version 1.0.2
Data files were processed on a computer running Microsoft Windows 10.0.22621 with a 64-bit Intel(R) Xeon(R) Silver 4214R CPU @ 2.40GHz processor with 24 threads and 96GB installed RAM.
.NET version: .NET 6.0.14
e: System.NullReferenceException: Object reference not set to an instance of an object.
at TaskLayer.PostSearchAnalysisTask.UpdateSpectralLibrary() in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\SearchTask\PostSearchAnalysisTask.cs:line 631
at TaskLayer.PostSearchAnalysisTask.Run() in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\SearchTask\PostSearchAnalysisTask.cs:line 92
at TaskLayer.SearchTask.RunSpecific(String OutputFolder, List1 dbFilenameList, List1 currentRawFileList, String taskId, FileSpecificParameters[] fileSettingsList) in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\SearchTask\SearchTask.cs:line 407
at TaskLayer.MetaMorpheusTask.RunTask(String output_folder, List1 currentProteinDbFilenameList, List1 currentRawDataFilepathList, String displayName) in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\MetaMorpheusTask.cs:line 493e.Message: Object reference not set to an instance of an object.e.InnerException: e.Source: TaskLayere.StackTrace: at TaskLayer.PostSearchAnalysisTask.UpdateSpectralLibrary() in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\SearchTask\PostSearchAnalysisTask.cs:line 631
at TaskLayer.PostSearchAnalysisTask.Run() in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\SearchTask\PostSearchAnalysisTask.cs:line 92
at TaskLayer.SearchTask.RunSpecific(String OutputFolder, List1 dbFilenameList, List1 currentRawFileList, String taskId, FileSpecificParameters[] fileSettingsList) in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\SearchTask\SearchTask.cs:line 407
at TaskLayer.MetaMorpheusTask.RunTask(String output_folder, List1 currentProteinDbFilenameList, List1 currentRawDataFilepathList, String displayName) in C:\projects\metamorpheus\MetaMorpheus\TaskLayer\MetaMorpheusTask.cs:line 493e.TargetSite: Void UpdateSpectralLibrary()

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant