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Dockerfile
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Dockerfile
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FROM bitnami/minideb:stretch
MAINTAINER Johannes Köster <johannes.koester@tu-dortmund.de>
ENV SINGULARITY_VERSION=2.4.5
ADD . /tmp/repo
WORKDIR /tmp/repo
ENV PATH /opt/conda/bin:${PATH}
ENV LANG C.UTF-8
ENV SHELL /bin/bash
RUN install_packages wget bzip2 ca-certificates gnupg2 squashfs-tools git && \
wget -O- http://neuro.debian.net/lists/xenial.us-ca.full > /etc/apt/sources.list.d/neurodebian.sources.list && \
wget -O- http://neuro.debian.net/_static/neuro.debian.net.asc | apt-key add - && \
install_packages singularity-container && \
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
bash Miniconda3-latest-Linux-x86_64.sh -b -p /opt/conda && \
rm Miniconda3-latest-Linux-x86_64.sh && \
conda update -n base conda && conda env update --name root --file /tmp/repo/environment.yml && conda clean --all -y && \
pip install .