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gunzip -c chr*.fa.masked > hg19.fa #13
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Yes, gzip will throw that error when you try to decompress ( You only need to decompress a file when it is compressed (it will have the |
I think you caught a typo in my tutorial! Thanks for reporting it. I haven't tested it, but I think the correct command is:
Good luck! Let me know how it goes. Thanks again for reporting the problem. |
Thank you so much for your prompt reply. Your tutorial is the best tutorial I can find online. It helps a lot for beginners like me. I also have a question about where to download ENCFF001UUQ.narrowPeak.gz and ENCFF001UUQ_gt8.narrowPeak.gz. You explained it in DNase-Seq data section but I am still not very sure where to find them. Thanks. |
It looks like the particular files I used in the tutorial have been archived. You should find a different study that interests you: Here is one possible example, showing the links to the BAM file and the narrowPeak bed file: |
Thank you a lot. It makes sense now. Best, Zhen |
Hello,
When I run
in CENTIPEDE.tutorial in Genomic sequence Section, I got the following error
Am I doing it wrong? Thanks.
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