SEIRcovid19FR

SEIRcovid19FR is an R package for multi-level inference of epidemic dynamics applied to COVID-19 in France.

Installation

You can install the development version of SEIRcovid19FR from GitHub with:

# install.packages("devtools")
devtools::install_github("sistm/SEIRcovid19")

Updating the Hospitalization data for Monolix :

1. download the new SurSaUD file in data/raw from data.gouv
2. update the file name and run the commented code in example of R/sursaud_covid19.R
3. reload the package
4. run the example script of R/prepare_data_4monolix.R

Mélanie Prague, Dan Dutartre & Boris Hejblum