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I am currently facing challenges with exporting files in Sirius 5.8.3 on Mac. Specifically, I am unable to export the following three files:
id/formula_candidate.tsv
id/structure_candidate.tsv
canopus_summary.tsv
Despite executing the provided command:
-o {odir} -i {mgf} formula --profile qtof --database all '
' --candidates 50 --ppm-max-ms2 10 '
' zodiac --thresholdFilter 0.98 fingerprint structure --database all canopus write-summaries'\
The exported files I currently have are:
canopus_compound_summary.tsv
canopus_formula_summary.tsv
canopus_neg.tsv
canopus_npc_neg.tsv
canopus_npc.tsv
canopus.tsv
compound_identifications.tsv
csi_fingerid_neg.tsv
csi_fingerid.tsv
formula_identifications.tsv
report.mztab
I am seeking guidance on how to rectify this issue and successfully export the three mentioned files. Your assistance in this matter would be highly appreciated.
Thank you in advance for your time.
The text was updated successfully, but these errors were encountered:
hfchang12
changed the title
Sirius 5.8.3 Output Directory Issue
Export Issues with Sirius 5.8.3
Oct 15, 2023
Good evening,
I am currently facing challenges with exporting files in Sirius 5.8.3 on Mac. Specifically, I am unable to export the following three files:
id/formula_candidate.tsv
id/structure_candidate.tsv
canopus_summary.tsv
Despite executing the provided command:
-o {odir} -i {mgf} formula --profile qtof --database all '
' --candidates 50 --ppm-max-ms2 10 '
' zodiac --thresholdFilter 0.98 fingerprint structure --database all canopus write-summaries'\
The exported files I currently have are:
canopus_compound_summary.tsv
canopus_formula_summary.tsv
canopus_neg.tsv
canopus_npc_neg.tsv
canopus_npc.tsv
canopus.tsv
compound_identifications.tsv
csi_fingerid_neg.tsv
csi_fingerid.tsv
formula_identifications.tsv
report.mztab
I am seeking guidance on how to rectify this issue and successfully export the three mentioned files. Your assistance in this matter would be highly appreciated.
Thank you in advance for your time.
The text was updated successfully, but these errors were encountered: