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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd"
>
<modelVersion>4.0.0</modelVersion>
<groupId>org.sing_group</groupId>
<artifactId>evoppi</artifactId>
<version>3.0.0</version>
<packaging>pom</packaging>
<name>EvoPPI</name>
<inceptionYear>2017</inceptionYear>
<developers>
<developer>
<name>Miguel Reboiro-Jato</name>
<organization>SING Group - University of Vigo</organization>
<organizationUrl>http://www.sing-group.org/</organizationUrl>
<email>mrjato@uvigo.es</email>
</developer>
<developer>
<name>Hugo López-Fernández</name>
<organization>SING Group - University of Vigo</organization>
<organizationUrl>http://www.sing-group.org/</organizationUrl>
</developer>
<developer>
<name>Noé Vázquez González</name>
<organization>SING Group - University of Vigo</organization>
<organizationUrl>http://www.sing-group.org/</organizationUrl>
</developer>
</developers>
<contributors>
<contributor>
<name>Jorge Vieira</name>
<organization>Instituto de Investigação e Inovação em Saúde, Universidade do Porto</organization>
<organizationUrl>https://www.i3s.up.pt/research-group.php?x=44</organizationUrl>
<email>jbvieira@ibmc.up.pt</email>
<roles>
<role>Principal Investigator</role>
</roles>
</contributor>
<contributor>
<name>Cristina P. Vieira</name>
<organization>Instituto de Investigação e Inovação em Saúde, Universidade do Porto</organization>
<organizationUrl>https://www.i3s.up.pt/research-group.php?x=44</organizationUrl>
<roles>
<role>Researcher</role>
</roles>
</contributor>
<contributor>
<name>Sara Rocha</name>
<organization>Instituto de Investigação e Inovação em Saúde, Universidade do Porto</organization>
<organizationUrl>https://www.i3s.up.pt/research-group.php?x=44</organizationUrl>
<roles>
<role>Researcher</role>
</roles>
</contributor>
<contributor>
<name>André Torres</name>
<organization>Instituto de Investigação e Inovação em Saúde, Universidade do Porto</organization>
<organizationUrl>https://www.i3s.up.pt/research-group.php?x=44</organizationUrl>
<roles>
<role>Researcher</role>
</roles>
</contributor>
<contributor>
<name>Rui Camacho</name>
<organization>Facultade de Engenharia, Universidade do Porto</organization>
<organizationUrl>https://sigarra.up.pt/feup/pt/web_page.inicial</organizationUrl>
<roles>
<role>Researcher</role>
</roles>
</contributor>
<contributor>
<name>Florentino Fdez-Riverola</name>
<organization>SING Group - University of Vigo</organization>
<organizationUrl>http://www.sing-group.org/</organizationUrl>
<roles>
<role>Researcher</role>
</roles>
</contributor>
</contributors>
<licenses>
<license>
<name>GNU GENERAL PUBLIC LICENSE, Version 3</name>
<url>http://www.gnu.org/licenses/gpl.html</url>
<distribution>repo</distribution>
</license>
</licenses>
<distributionManagement>
<repository>
<id>sing-maven-releases</id>
<name>SING Maven Releases</name>
<url>https://maven.sing-group.org/repository/maven-releases/</url>
</repository>
<snapshotRepository>
<id>sing-maven-releases</id>
<name>SING Maven Snapshots</name>
<url>https://maven.sing-group.org/repository/maven-snapshots/</url>
</snapshotRepository>
</distributionManagement>
<repositories>
<repository>
<id>sing-maven-releases</id>
<name>SING Maven Releases</name>
<url>https://maven.sing-group.org/repository/maven-releases/</url>
<releases>
<enabled>true</enabled>
</releases>
<snapshots>
<enabled>false</enabled>
</snapshots>
</repository>
<repository>
<id>sing-maven-snapshots</id>
<name>SING Maven Snapshots</name>
<url>https://maven.sing-group.org/repository/maven-snapshots/</url>
<releases>
<enabled>false</enabled>
</releases>
<snapshots>
<enabled>true</enabled>
</snapshots>
</repository>
</repositories>
<properties>
<!-- General properties -->
<maven.compiler.source>1.8</maven.compiler.source>
<maven.compiler.target>1.8</maven.compiler.target>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
<failOnMissingWebXml>false</failOnMissingWebXml>
<wildfly.home>${project.build.directory}/wildfly-${wildfly.version}</wildfly.home>
<wildfly.standalone>${project.basedir}/additional-material/wildfly10</wildfly.standalone>
<!-- license-maven-plugin configuration -->
<license.licenseName>gpl_v3</license.licenseName>
<license.copyrightOwners>Noé Vázquez González, Miguel Reboiro-Jato, Jorge Vieira, Hugo López-Fernández,
and Cristina Vieira</license.copyrightOwners>
<license.organizationName>SING Group (University of Vigo)</license.organizationName>
<license.addJavaLicenseAfterPackage>false</license.addJavaLicenseAfterPackage>
<!-- BOM versions -->
<arquillian.version>1.4.0.Final</arquillian.version>
<javaee.api.version>7.0</javaee.api.version>
<!-- Dependencies versions -->
<docker-java.version>3.0.14</docker-java.version>
<fluent-commons.version>0.1.0-SNAPSHOT</fluent-commons.version>
<swagger.version>1.5.16</swagger.version>
<wildfly.arquillian.container.version>2.1.1.Final</wildfly.arquillian.container.version>
<wildfly.version>10.1.0.Final</wildfly.version>
<interactomes-parser.version>0.3.0</interactomes-parser.version>
<gbff-parser.version>0.1.0</gbff-parser.version>
<commons-fileupload.version>1.3.3</commons-fileupload.version>
<seda.version>1.3.0</seda.version>
<!-- Resteasy specific version required, as it fixes ResourceInfo injection bug -->
<resteasy.version>3.0.24.Final</resteasy.version>
<!-- Testing dependecies versions -->
<arquillian.jacoco.version>1.0.0.Alpha9</arquillian.jacoco.version>
<arquillian.persistence.dbunit.version>1.0.0.Alpha7</arquillian.persistence.dbunit.version>
<arquillian.rest.version>1.0.0.Alpha4</arquillian.rest.version>
<dbunit.version>2.5.4</dbunit.version>
<easymock.version>3.5.1</easymock.version>
<fakesmtp.junit.runner.version>0.1.1</fakesmtp.junit.runner.version>
<hamcrest.version>2.0.0.0</hamcrest.version>
<jacoco.version>0.8.0</jacoco.version>
<junit.version>4.13.1</junit.version>
<mysql.connector.java.version>8.0.23</mysql.connector.java.version>
<slf4j.version>1.5.11</slf4j.version>
<!-- Plugins versions -->
<license-maven-plugin.version>1.14</license-maven-plugin.version>
<maven.antrun.plugin.version>1.8</maven.antrun.plugin.version>
<maven.compiler.plugin.version>3.6.1</maven.compiler.plugin.version>
<maven.ear.plugin.version>2.10.1</maven.ear.plugin.version>
<maven.javadoc.plugin.version>2.10.4</maven.javadoc.plugin.version>
<maven.jar.plugin.version>3.1.0</maven.jar.plugin.version>
<maven.dependency.plugin.version>3.0.1</maven.dependency.plugin.version>
<maven.deploy.plugin.version>2.8.2</maven.deploy.plugin.version>
<maven.resources.plugin.version>3.0.2</maven.resources.plugin.version>
<maven.source.plugin.version>3.0.1</maven.source.plugin.version>
<maven.surefire.plugin.version>2.20</maven.surefire.plugin.version>
<maven.failsafe.plugin.version>2.20</maven.failsafe.plugin.version>
<wildfly.maven.plugin.version>1.2.2.Final</wildfly.maven.plugin.version>
</properties>
<modules>
<module>domain</module>
<module>service</module>
<module>rest</module>
<module>ear</module>
<module>tests</module>
<module>dbhelper</module>
</modules>
<dependencyManagement>
<dependencies>
<!-- BOM -->
<dependency>
<groupId>javax</groupId>
<artifactId>javaee-api</artifactId>
<version>${javaee.api.version}</version>
</dependency>
<dependency>
<groupId>org.jboss.arquillian</groupId>
<artifactId>arquillian-bom</artifactId>
<version>${arquillian.version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>
<!-- Modules -->
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>evoppi-domain</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>evoppi-service</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>evoppi-rest</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>${project.groupId}</groupId>
<artifactId>evoppi-tests</artifactId>
<version>${project.version}</version>
<scope>test</scope>
</dependency>
<!-- General -->
<dependency>
<groupId>org.sing_group</groupId>
<artifactId>fluent-commons</artifactId>
<version>${fluent-commons.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>io.swagger</groupId>
<artifactId>swagger-jersey2-jaxrs</artifactId>
<version>${swagger.version}</version>
</dependency>
<dependency>
<groupId>org.jboss.resteasy</groupId>
<artifactId>resteasy-client</artifactId>
<version>${resteasy.version}</version>
</dependency>
<dependency>
<groupId>com.github.docker-java</groupId>
<artifactId>docker-java</artifactId>
<version>${docker-java.version}</version>
<exclusions>
<exclusion>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.sing_group</groupId>
<artifactId>interactomes-parser</artifactId>
<version>${interactomes-parser.version}</version>
</dependency>
<dependency>
<groupId>org.sing_group</groupId>
<artifactId>gbff-parser</artifactId>
<version>${gbff-parser.version}</version>
</dependency>
<dependency>
<groupId>commons-fileupload</groupId>
<artifactId>commons-fileupload</artifactId>
<version>${commons-fileupload.version}</version>
</dependency>
<dependency>
<groupId>org.sing_group</groupId>
<artifactId>seda</artifactId>
<version>${seda.version}</version>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit.version}</version>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>java-hamcrest</artifactId>
<version>${hamcrest.version}</version>
</dependency>
<dependency>
<groupId>org.easymock</groupId>
<artifactId>easymock</artifactId>
<version>${easymock.version}</version>
</dependency>
<dependency>
<groupId>com.github.sleroy</groupId>
<artifactId>fakesmtp-junit-runner</artifactId>
<version>${fakesmtp.junit.runner.version}</version>
</dependency>
<dependency>
<groupId>org.jboss.arquillian.extension</groupId>
<artifactId>arquillian-persistence-dbunit</artifactId>
<version>${arquillian.persistence.dbunit.version}</version>
</dependency>
<dependency>
<groupId>org.jboss.arquillian.extension</groupId>
<artifactId>arquillian-rest-client-impl-3x</artifactId>
<version>${arquillian.rest.version}</version>
</dependency>
<dependency>
<groupId>org.jboss.resteasy</groupId>
<artifactId>resteasy-jackson-provider</artifactId>
<version>${resteasy.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.jboss.arquillian.graphene</groupId>
<artifactId>graphene-webdriver</artifactId>
<version>${graphene.webdrive.version}</version>
<type>pom</type>
</dependency>
<dependency>
<groupId>org.jboss.arquillian.extension</groupId>
<artifactId>arquillian-jacoco</artifactId>
<version>${arquillian.jacoco.version}</version>
</dependency>
<dependency>
<groupId>org.jacoco</groupId>
<artifactId>org.jacoco.core</artifactId>
<version>${jacoco.version}</version>
</dependency>
<dependency>
<groupId>mysql</groupId>
<artifactId>mysql-connector-java</artifactId>
<version>${mysql.connector.java.version}</version>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<version>${slf4j.version}</version>
</dependency>
<dependency>
<groupId>org.wildfly</groupId>
<artifactId>wildfly-dist</artifactId>
<version>${wildfly.version}</version>
</dependency>
<dependency>
<groupId>org.wildfly.arquillian</groupId>
<artifactId>wildfly-arquillian-container-embedded</artifactId>
<version>${wildfly.arquillian.container.version}</version>
</dependency>
<dependency>
<groupId>org.dbunit</groupId>
<artifactId>dbunit</artifactId>
<version>${dbunit.version}</version>
</dependency>
</dependencies>
</dependencyManagement>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>${maven.compiler.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>${maven.javadoc.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>${maven.source.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<version>${maven.deploy.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>${maven.dependency.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<version>${maven.antrun.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>${maven.surefire.plugin.version}</version>
<configuration>
<!-- By default, only tests suites are executed -->
<includes>
<include>**/*TestSuite.java</include>
</includes>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<version>${maven.failsafe.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<version>${maven.resources.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.wildfly.plugins</groupId>
<artifactId>wildfly-maven-plugin</artifactId>
<version>${wildfly.maven.plugin.version}</version>
<configuration>
<!-- Avoids the execution of the wildfly:* goals in the subproject unless the plugin is activated in the subproject. -->
<skip>true</skip>
<java-opts>
<java-opt>-Xmx8G</java-opt>
</java-opts>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>${maven.jar.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-ear-plugin</artifactId>
<version>${maven.ear.plugin.version}</version>
</plugin>
<plugin>
<groupId>org.jacoco</groupId>
<artifactId>jacoco-maven-plugin</artifactId>
<version>${jacoco.version}</version>
<configuration>
<classDumpDir>${session.executionRootDirectory}/target/classes</classDumpDir>
</configuration>
<executions>
<execution>
<id>pre-unit-test</id>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>post-unit-test</id>
<phase>test</phase>
<goals>
<goal>report</goal>
</goals>
</execution>
<execution>
<id>pre-integration-test</id>
<phase>pre-integration-test</phase>
<goals>
<goal>prepare-agent</goal>
</goals>
</execution>
<execution>
<id>post-integration-test</id>
<phase>post-integration-test</phase>
<goals>
<goal>report</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</pluginManagement>
</build>
<profiles>
<profile>
<id>metadata-build</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>license-maven-plugin</artifactId>
<version>${license-maven-plugin.version}</version>
<executions>
<execution>
<id>first</id>
<goals>
<goal>update-file-header</goal>
</goals>
<phase>process-sources</phase>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<deployAtEnd>true</deployAtEnd>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>wildfly-embedded-h2</id>
<activation>
<activeByDefault>true</activeByDefault>
</activation>
<dependencies>
<dependency>
<groupId>org.wildfly.arquillian</groupId>
<artifactId>wildfly-arquillian-container-embedded</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-api</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-simple</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<testResources>
<testResource>
<directory>src/test/resources</directory>
</testResource>
<testResource>
<directory>src/test/resources-wildfly-embedded-h2</directory>
<excludes>
<exclude>standalone.xml</exclude>
</excludes>
</testResource>
</testResources>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<forkCount>1</forkCount>
<systemPropertyVariables>
<arquillian.launch>wildfly-embedded</arquillian.launch>
<java.util.logging.manager>org.jboss.logmanager.LogManager</java.util.logging.manager>
<jboss.socket.binding.port-offset>10000</jboss.socket.binding.port-offset>
<wildfly.version>${wildfly.version}</wildfly.version>
<wildfly.http.port>18080</wildfly.http.port>
<wildfly.management.port>19990</wildfly.management.port>
<wildfly.jbossHome>target/wildfly-${wildfly.version}</wildfly.jbossHome>
<wildfly.modulePath>target/wildfly-${wildfly.version}/modules</wildfly.modulePath>
</systemPropertyVariables>
<redirectTestOutputToFile>false</redirectTestOutputToFile>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<executions>
<execution>
<id>unpack</id>
<phase>generate-test-resources</phase>
<goals>
<goal>unpack</goal>
</goals>
<configuration>
<artifactItems>
<artifactItem>
<groupId>org.wildfly</groupId>
<artifactId>wildfly-dist</artifactId>
<version>${wildfly.version}</version>
<type>zip</type>
<overWrite>false</overWrite>
<outputDirectory>target</outputDirectory>
</artifactItem>
</artifactItems>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-resources-plugin</artifactId>
<executions>
<execution>
<id>copy-wildfly-resources</id>
<phase>process-test-resources</phase>
<goals>
<goal>copy-resources</goal>
</goals>
<configuration>
<outputDirectory>target/wildfly-${wildfly.version}/standalone/configuration</outputDirectory>
<resources>
<resource>
<directory>src/test/resources-wildfly-embedded-h2</directory>
<include>standalone.xml</include>
</resource>
</resources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
<profile>
<id>wildfly-mysql-run</id>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<configuration>
<skipTests>true</skipTests>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-failsafe-plugin</artifactId>
<configuration>
<skipTests>true</skipTests>
</configuration>
</plugin>
</plugins>
</build>
</profile>
</profiles>
</project>