{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":85620836,"defaultBranch":"master","name":"pcgr","ownerLogin":"sigven","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-03-20T20:06:04.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1872622?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1708417516.0","currentOid":""},"activityList":{"items":[{"before":"b578cd67a10a69c5441e55243f6c41cb31d447c8","after":"b649e719c3e074abf69bf430a4e998e7082131fe","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-05-23T14:30:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"simplify dependencies","shortMessageHtmlLink":"simplify dependencies"}},{"before":"cba6e9e6e2a53443a3e659a90834c444c1fe9cbb","after":"b578cd67a10a69c5441e55243f6c41cb31d447c8","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-05-23T12:34:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"remove CPSR dep","shortMessageHtmlLink":"remove CPSR dep"}},{"before":"bd9caf8a771de32ff8c6e167567759b00c035c7d","after":"cba6e9e6e2a53443a3e659a90834c444c1fe9cbb","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-05-23T12:32:20.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"remove CPSR dependency\n\nMerge branch 'bundle_update_2023' of github.com:sigven/pcgr into bundle_update_2023\n\n# Conflicts:\n#\tpcgrr/DESCRIPTION","shortMessageHtmlLink":"remove CPSR dependency"}},{"before":"2745c8c8618022c5e0bb0aa4a3db8a11ecca258a","after":"bd9caf8a771de32ff8c6e167567759b00c035c7d","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-05-19T22:56:21.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"Merge pull request #226 from umccr/conda_deps\n\nconda: install openxlsx2 + CNAqc during build stage","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2300068968\" data-permission-text=\"Title is private\" data-url=\"https://github.com/sigven/pcgr/issues/226\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/sigven/pcgr/pull/226/hovercard\" href=\"https://github.com/sigven/pcgr/pull/226\">#226</a> from umccr/conda_deps"}},{"before":"5190a4a53f224451be6de424b80d8459781380c9","after":"2745c8c8618022c5e0bb0aa4a3db8a11ecca258a","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-05-16T10:22:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"docs update","shortMessageHtmlLink":"docs update"}},{"before":"6d6039e6d43457267c13c964b87606e58376eec0","after":"5190a4a53f224451be6de424b80d8459781380c9","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-05-10T07:59:58.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"Merge branch 'bundle_update_2023' of github.com:sigven/pcgr into bundle_update_2023","shortMessageHtmlLink":"Merge branch 'bundle_update_2023' of github.com:sigven/pcgr into bund…"}},{"before":"43277f4b34f067990be4e8263e46af0d1a1bdddb","after":"6d6039e6d43457267c13c964b87606e58376eec0","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-30T14:14:11.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"Merge pull request #225 from umccr/bundle_update_2023_PD\n\nChanges from devtools::check","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2270704857\" data-permission-text=\"Title is private\" data-url=\"https://github.com/sigven/pcgr/issues/225\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/sigven/pcgr/pull/225/hovercard\" href=\"https://github.com/sigven/pcgr/pull/225\">#225</a> from umccr/bundle_update_2023_PD"}},{"before":"c8317707de4c5d7396e95cf93fa50143fbb608f5","after":"43277f4b34f067990be4e8263e46af0d1a1bdddb","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-27T09:17:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"improve signature analysis for primary sites with no reference signatures - new refbundle","shortMessageHtmlLink":"improve signature analysis for primary sites with no reference signat…"}},{"before":"197eb2adc1b2e81bfd750aafc2d4594e74163833","after":"c8317707de4c5d7396e95cf93fa50143fbb608f5","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-23T09:59:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"fix bug when SNVs = 0","shortMessageHtmlLink":"fix bug when SNVs = 0"}},{"before":"e75e8faf49fd14a2a826c1a2a3621dd19cc5ac79","after":"197eb2adc1b2e81bfd750aafc2d4594e74163833","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-22T21:42:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"fix excel output error","shortMessageHtmlLink":"fix excel output error"}},{"before":"8d291a639b4e80e9fd2f9a9f5b4d453bc44b460d","after":"e75e8faf49fd14a2a826c1a2a3621dd19cc5ac79","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-22T18:30:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"fix bugs and add biomarkers to Excel output","shortMessageHtmlLink":"fix bugs and add biomarkers to Excel output"}},{"before":"52279c99384d17fb5cbcf90b2602aab0198aecc7","after":"8d291a639b4e80e9fd2f9a9f5b4d453bc44b460d","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-22T11:39:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"quarto + excel 2024","shortMessageHtmlLink":"quarto + excel 2024"}},{"before":"69229a8402c9b45e395ad5963a5ef6f5b1b5db6a","after":"52279c99384d17fb5cbcf90b2602aab0198aecc7","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-06T09:10:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"code clean-up, arg checks","shortMessageHtmlLink":"code clean-up, arg checks"}},{"before":"16737fec377f35b403df87393745319cdc13c2b2","after":"69229a8402c9b45e395ad5963a5ef6f5b1b5db6a","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-04-04T22:56:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"expression update and bug fixes","shortMessageHtmlLink":"expression update and bug fixes"}},{"before":"3f655be76ec0734520841bb2b2c423c4606a4d3f","after":"16737fec377f35b403df87393745319cdc13c2b2","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-03-21T19:49:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"Approaching quarto-look","shortMessageHtmlLink":"Approaching quarto-look"}},{"before":"37a5ef9e5e679465ec6407394ce68b1c145a7226","after":"3f655be76ec0734520841bb2b2c423c4606a4d3f","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-03-13T22:47:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"towards quarto","shortMessageHtmlLink":"towards quarto"}},{"before":"2d831116aef93b9ed8e68ab23b45d7a68db5be39","after":"37a5ef9e5e679465ec6407394ce68b1c145a7226","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-02-27T12:45:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"bundle update re-engineering","shortMessageHtmlLink":"bundle update re-engineering"}},{"before":"fb63d12e27d57b91b949365afbb0b76270c5bbf6","after":"2d831116aef93b9ed8e68ab23b45d7a68db5be39","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-02-20T10:32:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"date fix","shortMessageHtmlLink":"date fix"}},{"before":"38acb3d4db434236fdeda6ff51bfd028dac74716","after":null,"ref":"refs/heads/pypkg","pushedAt":"2024-02-20T08:25:16.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"}},{"before":"05ed18568ca9744c189a6bd48d895d9db1b82697","after":"fb63d12e27d57b91b949365afbb0b76270c5bbf6","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-02-20T08:24:58.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"Merge pull request #222 from sigven/pypkg\n\nmove to pyproject.toml python pkg setup","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2143792341\" data-permission-text=\"Title is private\" data-url=\"https://github.com/sigven/pcgr/issues/222\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/sigven/pcgr/pull/222/hovercard\" href=\"https://github.com/sigven/pcgr/pull/222\">#222</a> from sigven/pypkg"}},{"before":null,"after":"38acb3d4db434236fdeda6ff51bfd028dac74716","ref":"refs/heads/pypkg","pushedAt":"2024-02-19T14:18:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pdiakumis","name":"Peter Diakumis","path":"/pdiakumis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29562861?s=80&v=4"},"commit":{"message":"move to pyproject.toml python pkg setup","shortMessageHtmlLink":"move to pyproject.toml python pkg setup"}},{"before":"b2cb64fe3f65449ad955cb096c5b283a00d35c00","after":"05ed18568ca9744c189a6bd48d895d9db1b82697","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-02-18T20:38:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"simplified tier assignment","shortMessageHtmlLink":"simplified tier assignment"}},{"before":"9faa345bb49c3d0b5efa807345c85a51333812b2","after":null,"ref":"refs/heads/ensembl_v111","pushedAt":"2024-02-03T23:30:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"pdiakumis","name":"Peter Diakumis","path":"/pdiakumis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29562861?s=80&v=4"}},{"before":"f8d0606743866b4a8244b1cd9b8ae2d55a2f4754","after":"b2cb64fe3f65449ad955cb096c5b283a00d35c00","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-02-03T23:05:32.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"Merge pull request #221 from sigven/ensembl_v111\n\nUpdate to Ensembl v111","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2116708766\" data-permission-text=\"Title is private\" data-url=\"https://github.com/sigven/pcgr/issues/221\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/sigven/pcgr/pull/221/hovercard\" href=\"https://github.com/sigven/pcgr/pull/221\">#221</a> from sigven/ensembl_v111"}},{"before":"5a94eb3d3a1d225ff00e2be6a95fa810d97a99ce","after":"f8d0606743866b4a8244b1cd9b8ae2d55a2f4754","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-02-03T23:04:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"minor updates","shortMessageHtmlLink":"minor updates"}},{"before":"7858fda058b3260a42b1603b1a4366076d4066a6","after":"dd725525e877ab6f7028a76cd88121f105912fdc","ref":"refs/heads/gh-pages","pushedAt":"2024-02-03T10:06:37.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"pdiakumis","name":"Peter Diakumis","path":"/pdiakumis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29562861?s=80&v=4"},"commit":{"message":"Built site for pcgrr: 1.4.1@2b8b15f - see https://sigven.github.io/pcgr/","shortMessageHtmlLink":"Built site for pcgrr: 1.4.1@2b8b15f - see <a href=\"https://sigven.github.io/pcgr/\" rel=\"nofollow\">https://sigven.github.io/pcgr/</a>"}},{"before":"dd725525e877ab6f7028a76cd88121f105912fdc","after":"7858fda058b3260a42b1603b1a4366076d4066a6","ref":"refs/heads/gh-pages","pushedAt":"2024-02-03T09:34:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Built site for pcgrr: 1.4.1.9001@6047c5b - see https://sigven.github.io/pcgr/","shortMessageHtmlLink":"Built site for pcgrr: 1.4.1.9001@6047c5b - see <a href=\"https://sigven.github.io/pcgr/\" rel=\"nofollow\">https://sigven.github.…</a>"}},{"before":"6047c5b8cd17f729c2714953c1edd4e58ce82703","after":"9faa345bb49c3d0b5efa807345c85a51333812b2","ref":"refs/heads/ensembl_v111","pushedAt":"2024-02-03T09:33:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"[bot] Updating conda-lock files (v1.4.1.9001)","shortMessageHtmlLink":"[bot] Updating conda-lock files (v1.4.1.9001)"}},{"before":null,"after":"6047c5b8cd17f729c2714953c1edd4e58ce82703","ref":"refs/heads/ensembl_v111","pushedAt":"2024-02-03T03:25:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"pdiakumis","name":"Peter Diakumis","path":"/pdiakumis","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/29562861?s=80&v=4"},"commit":{"message":"Bump version: 1.4.1.9000 → 1.4.1.9001","shortMessageHtmlLink":"Bump version: 1.4.1.9000 → 1.4.1.9001"}},{"before":"30df312331d4dbaff55b4be618aa48b179cb0b16","after":"5a94eb3d3a1d225ff00e2be6a95fa810d97a99ce","ref":"refs/heads/bundle_update_2023","pushedAt":"2024-01-04T13:12:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"sigven","name":"Sigve Nakken","path":"/sigven","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1872622?s=80&v=4"},"commit":{"message":"remove_file fix and type fix","shortMessageHtmlLink":"remove_file fix and type fix"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEUh766QA","startCursor":null,"endCursor":null}},"title":"Activity · sigven/pcgr"}