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ModifyDicomT2

Modify header information for Myomaps baseline (T2prep=0 ms, Tsat=0 ms) acquisitions. This is required for data analysis in cvi42 or Segment.

Installation

In order to use this software you need to have python installed on your computer. If you don't already have it, the easiest way to get python is to download Anaconda: https://www.anaconda.com/products/individual

Install ModifyDicomT2 on your computer with the following command:

pip install git+https://github.com/shportnoy/ModifyDicomT2

Running the script

Following installation, the script can be launched with the command:

modify_dicom_t2

How it works

  1. The script launches with a dialog box asking you to select a folder. Select the folder with the dicom images obtained from the T2-prepared Myomaps scan.
  2. The script will go through the dicoms in the folder and update the header information (specifically, the Image Comments field) for any baseline scan (with Tprep=0).
  3. All the dicoms will be copied into a new folder with the same name as the folder you selected in Step 1, appended by _corrected.
  4. The script closes.
  5. Import the _corrected folder into cvi42 for T2 fitting.