/
installer_alg_data.txt
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/
installer_alg_data.txt
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name:trimmomatic
download:wget
x86:http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.35.zip
src:http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.35.zip
x86stem:Trimmomatic-0.35
srcstem:Trimmomatic-0.35
srcbins:trimmomatic-0.35.jar
x86bins:trimmomatic-0.35.jar
testcmds:NA
srccmds:NA
installed:bin/trimmomatic-0.35.jar
name:eautils
download:wget
x86:https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/ea-utils/ea-utils.1.1.2-537.tar.gz
src:https://storage.googleapis.com/google-code-archive-downloads/v2/code.google.com/ea-utils/ea-utils.1.1.2-537.tar.gz
x86stem:ea-utils.1.1.2-537
srcstem:ea-utils.1.1.2-537
srcbins:fastq-mcf
x86bins:fastq-mcf
testcmds:PREFIX=./ make install
srccmds:PREFIX=./ make install
installed:bin/fastq-mcf
name:prinseq
download:wget
x86:http://tcpdiag.dl.sourceforge.net/project/prinseq/standalone/prinseq-lite-0.20.4.tar.gz
src:http://tcpdiag.dl.sourceforge.net/project/prinseq/standalone/prinseq-lite-0.20.4.tar.gz
x86stem:prinseq-lite-0.20.4
srcstem:prinseq-lite-0.20.4
x86bins:prinseq-lite.pl
srcbins:prinseq-lite.pl
testcmds:NA
srccmds:NA
installed:bin/prinseq-lite.pl
name:bowtie2
download:wget
x86:http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip
src:http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip
x86stem:bowtie2-2.2.6
srcstem:bowtie2-2.2.6
x86bins:bowtie2;bowtie2-build
srcbins:bowtie2;bowtie2-build
testcmds:NA
srccmds:NA
installed:bin/bowtie2;bin/bowtie2-build
name:bmtagger
download:wget -r --no-parent --reject fa,wbm
x86:ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/
src:ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/
x86stem:bmtagger
srcstem:bmtagger
x86bins:bmtagger.sh;bmfilter;bmtool;srprism
srcbins:bmtagger.sh;bmfilter;bmtool;srprism
testcmds:NA
srccmds:NA
installed:bin/bmtagger.sh;bin/bmfilter;bin/bmtool;bin/srprism
name:fastuniq
download:wget
x86:http://downloads.sourceforge.net/project/fastuniq/FastUniq-1.1.tar.gz
src:http://downloads.sourceforge.net/project/fastuniq/FastUniq-1.1.tar.gz
x86stem:FastUniq/source
srcstem:FastUniq/source
x86bins:fastuniq
srcbins:fastuniq
testcmds:make
srccmds:make
installed:bin/fastuniq
name:seqret
download:wget
x86:ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/EMBOSS-6.5.7.tar.gz
src:ftp://emboss.open-bio.org/pub/EMBOSS/old/6.5.0/EMBOSS-6.5.7.tar.gz
x86stem:EMBOSS-6.5.7
srcstem:EMBOSS-6.5.7
srcbins:/emboss/seqret
x86bins:/emboss/seqret
testcmds:./configure --without-x; make; make check
srccmds:./configure --without-x; make
installed:bin/seqret
name:fastqc
download:wget
x86:http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.4.zip
src:http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.4.zip
x86stem:FastQC
srcstem:FastQC
srcbins:fastqc
x86bins:fastqc
testcmds:NA
srccmds:NA
installed:bin/fastqc