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CHANGELOG.rst

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Change Log

v1.3.2

  • Fixed event partiioning bugs.
  • [GUI] UI tweaks.

v1.3.1

  • Bug fix release.

v1.3

  • Added a new MOSAIC examples repository that contains plotting scripts and Jupyter notebooks (https://github.com/usnistgov/mosaic-examples)
  • Updated Bessel fiter implementation to allow causal and non-causal filters.
  • Added the CUSUM+ algorithm (see pull requests #34, #43, #45, and #46)
  • Added the ability to read arbitrary binary files.
  • Renamed StepResponseAnalysis to ADEPT 2-state.
  • Renamed multiStateAnalysis to ADEPT.
  • CUSUM+ is now used to generate initial guesses for ADEPT
  • Streamlined unit test framework. Added new tests for CUSUM+.
  • Updated MOSAIC dependencies to include newer package versions and pandas. Run 'python setup.py mosaic_deps' to update.
  • Added a new metadata column (mdStateResTime) that saves the residence time of each state to the database. This affects ADEPT and CUSUM+.
  • Processing time per event is now saved to the database.
  • Added support for warning status codes that begin with 'w'. These codes preserve metadata in the SQLite output and are used to flag events that need closer inspection.
  • Removed mosaicgui from PyPi. 'pip install mosaic-nist' only installs command line modules.
  • Top level ConvertTrajIO supports binary and ASCII files.
  • Added Travis continous integration support.
  • [GUI] Added a binary update service for Windows and OS X.
  • [GUI] Added a table that displays fit parameters in the event viewer window.
  • [GUI] Added more descriptive fit errors.
  • [GUI] Added CUSUM+ support to MOSAIC GUI.
  • [GUI] Export SQLITE database to CSV (#56).
  • [GUI] Support for warning codes in fit event viewer.
  • [GUI] Performance optimizations.
  • [GUI] Fit window in MOSAIC GUI displays idealized pulses overlays.
  • [GUI] Added additional analysis statistics.
  • [Addons] Added CUSUM+ support to Mathematica addon (PlotEvents in MosaicUtils.m)
  • [Addons] Mathematica queries are optionally handled through an external Python script to improve performance.
  • [Addons] Added an option to limit PlotEvents in Mathematica addon to N events.
  • Known Issues: See #8, #10, #40, #63 and #69.

v1.2

  • Added support for arbitrary binary file formats (#33)
  • [GUI] Included binary file support.
  • Documentation updates and bug fixes.
  • Known Issues: See #8 and #10.

v1.1

  • [Addons] IGOR support.
  • PyPi package automatically installs MOSAIC dependencies.
  • Miscellaneous bug fixes.
  • Known Issues: See #8 and #10.

v1.0

  • Fixed a bug in multistate code that constrained the RC constant resulting in systematic fitting errors (pull request #25).
  • Updated multistate to include a separate RC constant for each state, to be consistent with functional form in Balijepalli et al., ACS Nano 2014.
  • Misc bug fixes in tsvTrajIO parsing.
  • The number of states is saved to the MDIO DB for multistate analysis (issue #26).
  • Created a new package on PyPI (mosaic-nist) to allow installation with setuptools.
  • [GUI] Updated help link to point to Sphinx documentation on Github.
  • Known Issues: See #8 and #10

v1.0b3.2

  • [GUI] Misc bug fixes
  • [Addons] Added code to import MOSAIC output into Matlab (pull requests #18 and #20)
  • [Addons] Updated Mathematica addons to automatically decode multi-state data.
  • Resolves issues #16 and #22

v1.0b3.1

  • [GUI] Added multiState support to mosaicgui.
  • Analysis information such as alogirthms used, data type, etc. are now stored within a MDIO database.
  • [GUI] Autocomplete in mosaicgui only suggests database columns that are valid when used in a query.
  • Reorganized Mathematica addon code.

v1.0b3

  • Fixed a bug that prevented events longer than ~700 data points from being correctly analyzed.
  • Fixed a problem that prevented event data from being correctly padded before analysis.
  • Resolves #2. TrajIO settings are now read in from the settings file.
  • [GUI] Resolves #3. Threshold entry box in GUI becomes nonresponsive when meanOpenCurr is negative.
  • [GUI] Resolves #4. Analysis fails when using wavletDenioseFilter from GUI.
  • [GUI] Histogram in BlockDepthViewer window can be saved to a CSV file from the File Menu.
  • Analysis log is saved to the MDIO database.
  • [GUI] ConsoleLogViwer displays the analysis log saved in the MDIO database.
  • [GUI] Added a new dialog that displays an experimental feature warning wavelet-based denoising is selected.
  • Updated error codes reported in database to be more descriptive of the failure.
  • Improved and expanded unit testing framework.
  • Moved installation and testing to setuptools.

v1.0b2

  • [GUI] Fixed threshold update error from 1.0b1.
  • Considerably improved automatic open channel state detection.
  • The default settings string is now included within the source code.
  • Implemented new top-level class ConvertToCSV that allows conversion of data read by any TrajIO object to comma separated files.
  • Updated build system and unit testing framework.
  • [GUI] Misc UI updates.

v1.0b1

  • [GUI] Added a menu option to save a settings file prior to starting the analysis.
  • [GUI] Current threshold is now defined by an ionic current. The trajectory viewer displays the deviation of the threshold from the mean current.
  • Analysis settings are saved within the analysissettings table of the sqlite database. When an analysis database is loaded into the GUI, settings are parsed from within the database.
  • When an analysis file is loaded, widgets in the main window remain enabled. This allows starting a new analysis run with the current settings.
  • [GUI] Implemented an analysis log viewer that displays the event processing log.
  • [GUI] Initial commit of wavelets based peak detection in blockdepthview.
  • [GUI] Added all points histogram to trajectory viewer.
  • Known Issues: Selecting automatic baseline detection can sometimes cause the threshold in the trajectory viewer to change. Moving the slider will cause the settings and trajectory windows to synchronize.