default.m

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% preferences file for crabsort
% crabsort has many preferences, and, instead of wasting time building more and more UI to handle them, all preferences are in this text file (like in Sublime Text)
% this is meant to be read by corelib.readPref
% 
% created by Srinivas Gorur-Shandilya at 4:52 , 16 September 2015. Contact me at http://srinivas.gs/contact/
% 

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% should we bother measuring delays b/w channels?
skip_delays = false;

% how many seconds around artifacts should we ignore? 
artifact_buffer = 1; % second


% if you're sure that all your ABF files in a single folder
% have the same format (same #channels, etc), then 
% set this to true
skip_abf_check = false;

% what are the possible names of nerves, units, channels?
channel_names = sort({'ogn','dgn','gpn','lgn','lpn','lvn','mgn','mvn','pdn','temperature','pyn','PD','AB','LPG','LP','IC','LG','MG','GM','PY','VD','Int1','DG','AM'});


% specify which units exist on which nerves
nerve2neuron.ogn = {'MCN1','OMN'};
nerve2neuron.PY = 'PY';
nerve2neuron.LP = 'LP';
nerve2neuron.PD = 'PD';
nerve2neuron.lpn = 'LP';
nerve2neuron.pdn = 'PD';
nerve2neuron.pyn = {'PY', 'LPG'};
nerve2neuron.lvn = {'LP','PD','GM'};
nerve2neuron.lgn = {'LG','MG'};
nerve2neuron.mvn = {'VD','IC','PY'};
nerve2neuron.dgn = {'DG','GM','AGR'};
nerve2neuron.dvn = {'DG','MG','AGR'};


consolidate_these_neurons_on_close = {'LP','PD'};

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plot_line_width = .5;

putative_spike_colour = 'm';
embedded_spike_colour = 'g';

fs = 14; 					% UI font size
fw = 'bold'; 				% UI font weight

% context width: window around the spike to show when clicked on in a reduced representation
context_width = .2; % seconds. 

% what spike markers do you want to use to display
% sorted spikes? 
spike_markers = {'o','x','p','h','+','s','d'};

% to focus on one channel, other channels can be made
% transparent. what opacity level do you want? 
data_opacity = .5; 


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% use MATLAB's built in t-SNE?
use_matlab_tsne = true;