No reports when Tower is enabled using the config file

[mantczakaus]

Scenario to reproduce:

1. Set up configuration file in /home_directory/.nextflow/config

singularity {
    cacheDir = '/path/.nextflow/NXF_SINGULARITY_CACHEDIR'
    autoMounts = true
}
conda {
    cacheDir = '/path/.nextflow/NXF_CONDA_CACHEDIR'
}
process {
  executor = 'slurm'
  scratch = false
  cleanup = false
  beforeScript = 'module load singularity/3.8.6' 
}
tower {
  accessToken = 'XXXX'
  endpoint = 'https://tower.nf/api'
  enabled = true
}

2. Create a folder where you’ll store the results folder, work folder and all the logs, e.g. /path/tower_tests
3. Create a launch.sh in the folder you just created. This is what it should be inside of the launch.sh

#!/bin/bash
#SBATCH -N 1
#SBATCH --job-name=test
#SBATCH --mem=4G
#SBATCH --time=23:00:00
#SBATCH --cpus-per-task=2
#SBATCH --partition=work


#work on current directory (folder)
cd $SLURM_SUBMIT_DIR

#load singularity and set up memory settings to run nextflow
module load singularity/3.8.6
NXF_OPTS='-Xms1g -Xmx4g'

#run the rnaseq pipeline
nextflow run nf-core/rnaseq \
        --outdir results \
        -profile singularity,test \
        -r 3.11.2 \
        -resume

4. Submit the launch.sh to the Slurm queue
   sbatch launch.sh
5. After the pipeline finishes running, go to Tower, find the run and go to the Reports tab

Actual results: the Reports tab is present but the reports are not displayed

Expected results: reports should be available (tower.yml present in the pipeline folder; see below)

I tested this when the pipeline was launched from the Tower (-with-tower) and the reports were there.