How to only demultiplex raw reads (not mapped reads) using zUMIs

[ytang0831]

Hi~
zUMIs is very flexible in demultiplexing cells. But now i can only get the demultiplexed mapped bam file. How can i get the demultiplexed raw reads?
Best,

[cziegenhain]

Hi, this features is not available in zUMIs.

[ytang0831]

Hi, this features is not available in zUMIs.

Can you add this feature in the next version?

[cziegenhain]

Unfortunately I dont think there will be any such updates in the foreseeable future.