Fixes for MuData 0.3 release #53
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Currently fsspec is not a dependency. However both BufferedReader and OpenFile instances should be accepted by the HDF5 reader functions.
Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## mudata-0.3 #53 +/- ##
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+ Coverage 69.12% 70.19% +1.06%
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Files 14 17 +3
Lines 1671 1892 +221
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+ Hits 1155 1328 +173
- Misses 516 564 +48
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avoid name (pandas index) sorting when adding new modalities. Resolves #46.
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MuDatadimensions in__repr__().unscontents for views (Support for mudata.uns? #52)mod-orderattribute inread_zarr()(Error reading zarr file #48).var_namesin the global index when modalities are added and.var_namesare intersecting (Adding modality to MuData.mod #46)boolwhen there are no null values (Numpy IndexError in muon._core.tools.mofa muon#111)