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Create Seurat Object from matrix and two text files #161

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sky5198 opened this issue Nov 3, 2023 · 1 comment
Open

Create Seurat Object from matrix and two text files #161

sky5198 opened this issue Nov 3, 2023 · 1 comment

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@sky5198
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sky5198 commented Nov 3, 2023

I am trying to create a seurat object from the available files from https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM5596828. The data that is available to create a seurat object from Sci-sequencing data are the counts matrix (matrix.gz), cell annotation (txt.gz), and gene annotation (txt.gz). I am having some issue combining these files to create one seurat object. I have tried to change the file names to fit the seurat format but that does not work. Do you have any suggestions?

@HappinessEricst
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I am having same issue keeps telling me to reinstall seuratobject. This is the message i keep receiving
"Loading required package: sp
'SeuratObject' was built with package 'Matrix' 1.6.3 but the current version is 1.6.4; it is
recomended that you reinstall 'SeuratObject' as the ABI for 'Matrix' may have changed"

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