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Selection of the number of cells used for the NB regression in SCTransform #118

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BiotechPedro opened this issue Dec 13, 2021 · 0 comments

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@BiotechPedro
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Hello everyone 馃槃

First of all, thank you for the great and easy Seurat framework in general!

By default ncells = 5000 in SCTransform(), but I am asking myself what is the more accurate number of cells for each dataset. For example, I am blindy using the 40% of the cells to build the regression. Do you have some estimates for the best percentage, or it similarly works for a broad range of ncells?

Thank you!

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