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Error when using the web app for PBMC annotation #206

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aaronejaime opened this issue Feb 1, 2024 · 1 comment
Open

Error when using the web app for PBMC annotation #206

aaronejaime opened this issue Feb 1, 2024 · 1 comment

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@aaronejaime
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Hello everyone.

Im having some trouble loading data into the web app of Azimuth. Previously in RStudio Ive created a RDS file and then try to loading it into Azimuth but it throws the following error "No RNA assay provided".

When I look for the assays into my Seurat Object:

obj@assays

$RNA
Assay (v5) data with 17222 features for 7615 cells
Layers:
counts, data, scale.data

I am not sure how to fix this or if I don't even have to fix or specify something. Anybody can help?

@ryland-mortlock
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Getting the same error. My .rds file is a merged seurat object using seurat v5

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