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JN.2+Orf1a:C3059S+S:L455S(48 seqs, 6 countries) >5% in Rio de Janeiro in February #1314

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aviczhl2 opened this issue Jan 20, 2024 · 10 comments
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JN.2+Orf1a:C3059S+S:L455S(48 seqs, 6 countries) >5% in Rio de Janeiro in February #1314

aviczhl2 opened this issue Jan 20, 2024 · 10 comments
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BA.2.86 JN.1 Spike S:455 To be proposed Green light for proposal

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@aviczhl2
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One more BA.2.86*+S:L455S branch.

JN.2+G16221T+T9440A(Orf1a:C3059S)+T22926C(S:L455S)

GISAID query: G16221T,T9440A,T22926C
No. of seqs: 6(Brazil 4 Spain 1 France 1)

First: EPI_ISL_18676851, France, 2023-12-4
Latest: EPI_ISL_18791431, Brazil, 2024-1-13

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@corneliusroemer
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455S might be acquired through intra-BA.2.86.1 recombination

Bit to small right now, let's watch

@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(6 seqs, 3 countries) JN.2+Orf1a:C3059S+S:L455S(8 seqs, 3 countries) Feb 4, 2024
@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(8 seqs, 3 countries) JN.2+Orf1a:C3059S+S:L455S(12 seqs, 3 countries) Feb 21, 2024
@FedeGueli
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12 now

@aviczhl2
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+3 UK

@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(12 seqs, 3 countries) JN.2+Orf1a:C3059S+S:L455S(15 seqs, 4 countries) Feb 27, 2024
@aviczhl2
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aviczhl2 commented Mar 1, 2024

+3 Canada +1 USA

@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(15 seqs, 4 countries) JN.2+Orf1a:C3059S+S:L455S(19 seqs, 6 countries) Mar 1, 2024
@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(19 seqs, 6 countries) JN.2+Orf1a:C3059S+S:L455S(20 seqs, 6 countries) Mar 5, 2024
@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(20 seqs, 6 countries) JN.2+Orf1a:C3059S+S:L455S(24 seqs, 6 countries) Mar 9, 2024
@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(24 seqs, 6 countries) JN.2+Orf1a:C3059S+S:L455S(33 seqs, 6 countries) Mar 14, 2024
@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(33 seqs, 6 countries) JN.2+Orf1a:C3059S+S:L455S(33 seqs, 6 countries) 5% in Rio de Janeiro in February Mar 14, 2024
@FedeGueli
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FedeGueli commented Mar 14, 2024 •
edited

33 mostly new ones from Rio de Janeiro, where its share is apparently around 5% in February

@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(33 seqs, 6 countries) 5% in Rio de Janeiro in February JN.2+Orf1a:C3059S+S:L455S(35 seqs, 6 countries) 5% in Rio de Janeiro in February Mar 19, 2024
@aviczhl2 aviczhl2 changed the title JN.2+Orf1a:C3059S+S:L455S(35 seqs, 6 countries) 5% in Rio de Janeiro in February JN.2+Orf1a:C3059S+S:L455S(39 seqs, 6 countries) 5% in Rio de Janeiro in February Mar 23, 2024
@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(39 seqs, 6 countries) 5% in Rio de Janeiro in February JN.2+Orf1a:C3059S+S:L455S(41 seqs, 6 countries) 5% in Rio de Janeiro in February Mar 26, 2024
@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(41 seqs, 6 countries) 5% in Rio de Janeiro in February JN.2+Orf1a:C3059S+S:L455S(41 seqs, 6 countries) >5% in Rio de Janeiro in February Mar 26, 2024
@FedeGueli
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+2 Federal District Brazil

@FedeGueli
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@aviczhl2 please propose it.

@FedeGueli FedeGueli added To be proposed Green light for proposal and removed Rapid review needed labels Mar 26, 2024
@aviczhl2 aviczhl2 mentioned this issue Mar 26, 2024
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@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(41 seqs, 6 countries) >5% in Rio de Janeiro in February JN.2+Orf1a:C3059S+S:L455S(44 seqs, 6 countries) >5% in Rio de Janeiro in February Apr 1, 2024
@FedeGueli FedeGueli changed the title JN.2+Orf1a:C3059S+S:L455S(44 seqs, 6 countries) >5% in Rio de Janeiro in February JN.2+Orf1a:C3059S+S:L455S(48 seqs, 6 countries) >5% in Rio de Janeiro in February Apr 16, 2024
@FedeGueli
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+4 Para' Brazil, maybe worth watching it a bit more, even if samples are not recent

@FedeGueli FedeGueli reopened this Apr 16, 2024
@aviczhl2
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+4 Para' Brazil, maybe worth watching it a bit more, even if samples are not recent

Already Proposed to main page. cov-lineages/pango-designation#2534

@FedeGueli
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+4 Para' Brazil, maybe worth watching it a bit more, even if samples are not recent

Already Proposed to main page. cov-lineages/pango-designation#2534

ah ok sorry didnt see that i thought you closed it for recency of samples

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@aviczhl2 @corneliusroemer @FedeGueli