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Fine mapping to reproduce COVID19 results #14

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priyamvadagr opened this issue May 31, 2023 · 2 comments
Open

Fine mapping to reproduce COVID19 results #14

priyamvadagr opened this issue May 31, 2023 · 2 comments
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@priyamvadagr
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priyamvadagr commented May 31, 2023 •
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Hi,
I am trying to reproduce the fine mapping results for your COVID19 analysis, but I am not able to get the same sentinel SNPs as reported. Would it be possible for you to share the reference panel and script used by you?
Thanks
@priyamvadagr priyamvadagr added the bug Something isn't working label May 31, 2023
@fl-yu
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fl-yu commented Jun 5, 2023

Hi We appreciate your interest in our work. Would the following information be beneficial to you? https://github.com/sankaranlab/SCAVENGE-reproducibility/blob/main/data/finemappedtraits_hg19/covid19hg_B1_FMdata.txt

@fl-yu fl-yu added help wanted Extra attention is needed and removed bug Something isn't working labels Jun 5, 2023
@priyamvadagr
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Hi! Thank you for getting back to me. We want to reproduce these finemapping results and were wondering if you could provide us with details regarding the reference panel used.

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