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configure.ac
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configure.ac
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# Configure script for hfile-crypt4gh, HTSlib crypt4gh plug-in
#
# Copyright (C) 2019 Genome Research Ltd.
#
# Author: Rob Davies <rmd@sanger.ac.uk>
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is
# furnished to do so, subject to the following conditions:
#
# The above copyright notice and this permission notice shall be included in
# all copies or substantial portions of the Software.
#
# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
# DEALINGS IN THE SOFTWARE.
dnl Process this file with autoconf to produce a configure script
AC_INIT([hfile-crypt4gh], m4_esyscmd_s([./version.sh 2>/dev/null]),
[samtools-help@lists.sourceforge.net], [], [http://www.htslib.org/])
AC_PREREQ([2.63]) dnl This version introduced 4-argument AC_CHECK_HEADER
AC_CONFIG_SRCDIR([plugin/hfile_crypt4gh.c])
AC_CONFIG_HEADERS([config.h])
m4_include([m4/hts_prog_cc_warnings.m4])
m4_include([m4/ax_with_htslib.m4])
dnl Copyright notice to be copied into the generated configure script
AC_COPYRIGHT([Portions copyright (C) 2019 Genome Research Ltd.
This configure script is free software: you are free to change and
redistribute it. There is NO WARRANTY, to the extent permitted by law.])
AC_ARG_WITH([plugin-dir],
[AS_HELP_STRING([--with-plugin-dir=DIR],
[plugin installation location [LIBEXECDIR/htslib]])],
[case $withval in
yes|no) AC_MSG_ERROR([no directory specified for --with-plugin-dir]) ;;
esac],
[with_plugin_dir='$(libexecdir)/htslib'])
AC_SUBST([plugindir], $with_plugin_dir)
AC_PROG_CC
dnl Turn on compiler warnings, if possible
HTS_PROG_CC_WARNINGS
dnl Flags to treat warnings as errors. These need to be applied to CFLAGS
dnl later as they can interfere with some of the tests (notably AC_SEARCH_LIBS)
HTS_PROG_CC_WERROR(hts_late_cflags)
AC_SYS_LARGEFILE
AX_WITH_HTSLIB
if test "$ax_cv_htslib" != yes; then
AC_MSG_ERROR([HTSlib development files not found
Building hfile-crypt4gh requires either an unpacked HTSlib source tree (which
will be built in conjunction with hfile-crypt4gh) or a previously-installed
HTSlib. In either case you may need to configure --with-htslib=DIR to locate
the appropriate HTSlib.
FAILED. You must supply an HTSlib in order to build samtools successfully.])
fi
if test "$ax_cv_htslib_which" = source; then
Hsource=
Hinstall='#'
else
Hsource='#'
Hinstall=
fi
AC_SUBST([Hsource])
AC_SUBST([Hinstall])
dnl Force POSIX mode on Windows/Mingw
test -n "$host_alias" || host_alias=unknown-`uname -s`
case $host_alias in
*-msys* | *-MSYS* | *-mingw* | *-MINGW*)
host_result="MSYS dll"
PLATFORM=MSYS
PLUGIN_EXT=.dll
# This also sets __USE_MINGW_ANSI_STDIO which in turn makes PRId64,
# %lld and %z printf formats work. It also enforces the snprintf to
# be C99 compliant so it returns the correct values (in kstring.c).
CPPFLAGS="$CPPCFLAGS -D_XOPEN_SOURCE=600"
;;
esac
libsodium_devel=ok
AC_CHECK_HEADER([sodium.h], [], [libsodium_devel=missing], [;])
AC_SEARCH_LIBS([sodium_version_string], [sodium],
[AC_DEFINE([HAVE_LIBSODIUM], 1, [Define if libsodium is present])
AS_IF([test "$ac_cv_search_sodium_version_string" != "none required"],
HFILE_CRYPT4GH_LIBS=$ac_cv_search_sodium_version_string)],
[libsodium_devel=missing])
AS_IF([test $libsodium_devel != ok], [dnl
AC_MSG_ERROR([Libsodium development files not found.
hfile_crypt4gh requires libsodium <https://download.libsodium.org/doc/>.
Building hfile_crypt4gh requires libsodium development files to be installed
on the build machine; you may need to ensure a package such as libsodium-dev
(on Debian or Ubuntu Linux) or libsodium-devel (on RPM-based Linux
distributions or Cygwin) is installed.
Libsodium can also be obtained from
https://download.libsodium.org/libsodium/releases/
])
])
dnl Apply value from HTS_PROG_CC_WERROR (if set)
AS_IF([test "x$hts_late_cflags" != x],[CFLAGS="$CFLAGS $hts_late_cflags"])
AC_CONFIG_FILES([Makefile])
AC_OUTPUT