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[BUG] cannot download a single experiment from command line #201

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marcomoretto opened this issue Oct 9, 2023 · 1 comment
Open

[BUG] cannot download a single experiment from command line #201

marcomoretto opened this issue Oct 9, 2023 · 1 comment
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@marcomoretto
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Describe the bug
Running pysradb from command line to download a single experiment SRX results into the program hanging forever.

To Reproduce
Steps to reproduce the behavior:
pip install git+https://github.com/saketkc/pysradb
pysradb download -y -t 8 --out-dir ./pysradb_downloads -x SRX1254413

Additional context
I used Google colab to reproduce the bug with the latest version of pysradb available in GitHub

@marcomoretto marcomoretto added the bug Something isn't working label Oct 9, 2023
@saketkc
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saketkc commented Dec 6, 2023

Thanks for catching this and apoligies for the delayed response. I think there is a bug in the download module. For now I would recommend saving the metadata in a csv using pysradb metadata --detailed <SRP> --saveto x.tsv and using a tool like curl/wget to download files from the *_url column

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