Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

[BUG] varying number of columns in output #185

Open
bernt-matthias opened this issue Mar 29, 2023 · 0 comments
Open

[BUG] varying number of columns in output #185

bernt-matthias opened this issue Mar 29, 2023 · 0 comments
Labels
bug Something isn't working

Comments

@bernt-matthias
Copy link

Describe the bug

For this request

pysradb search --db sra --query 'NextSeq 500 stress' --source 'transcriptomic' --organism 'Arabidopsis thaliana' --platform 'illumina' --selection 'random' --strategy 'rna seq'  --max 20 --verbosity 3 --stats --saveto 'output.tsv'

I get outputs with different numbers of columns: something between 125 and 129.

Is this expected?

To Reproduce

See above

Desktop (please complete the following information):

  • OS: Ubuntu (pysradb installed via conda)
  • Python version 3.11.0

Additional context
@bernt-matthias bernt-matthias added the bug Something isn't working label Mar 29, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@bernt-matthias