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Vinayagam et al. suppl: download fails from sciencemag due to lack of cookie #76

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j-bac opened this issue Jul 10, 2023 · 0 comments
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j-bac commented Jul 10, 2023

Trying to run:

library(OmnipathR)
library(nichenetr)

nichenet_results <- nichenet_main(
    expressed_genes_transmitter = expressed_genes_transmitter,
    expressed_genes_receiver = expressed_genes_receiver,
    genes_of_interest = genes_of_interest,
    background_genes = background_genes,
    signaling_network = list(
        cpdb = NULL,
        evex = list(min_confidence = 1.0)
    ),
    gr_network = list(only_omnipath = TRUE),
    n_top_ligands = 20,
    mlrmbo_optimization_param = list(ncores = 4)
)

Results in:

[2023-07-10 12:29:26] [ERROR]   [OmnipathR] Failed to download https://www.science.org/action/downloadSupplement?doi=10.1126%2Fscisignal.2001699&file=4_rs8_tables_s1_s2_and_s6.zip (attempt 3/3); error: HTTP 403
@deeenes deeenes added the bug Something isn't working label Jul 10, 2023
@deeenes deeenes self-assigned this Jul 10, 2023
@deeenes deeenes changed the title Error OmnipathR Failed to download Vinayagam et al. suppl: download fails from sciencemag due to lack of cookie Sep 19, 2023
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