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I am trying to use SeqVec in colab but the following installation commands probably dont work anymore (maybe is a dependencies version think).
i use these commands to install:
!pip3 install -U pip > /dev/null !pip3 install -U bio_embeddings[all] > /dev/null
and i get this
**WARNING: bio-embeddings 0.1.3 does not provide the extra 'all' error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully. │ exit code: 1 ╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip. error: subprocess-exited-with-error
note: This error originates from a subprocess, and is likely not a problem with pip.**
Is there a colab example that works these days?
The text was updated successfully, but these errors were encountered:
I am trying to use PhageRBP detect and facing the same issue! Please help @sacdallago
Sorry, something went wrong.
Hi! I got the same error trying to use the SeqVec in colab
(https://colab.research.google.com/github/sacdallago/bio_embeddings/blob/develop/notebooks/extract_supervised_from_seqvec.ipynb).
error: subprocess-exited-with-error
note: This error originates from a subprocess, and is likely not a problem with pip.
Any suggestion on how I can fix it?
Thanks
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I am trying to use SeqVec in colab but the following installation commands probably dont work anymore (maybe is a dependencies version think).
i use these commands to install:
!pip3 install -U pip > /dev/null
!pip3 install -U bio_embeddings[all] > /dev/null
and i get this
**WARNING: bio-embeddings 0.1.3 does not provide the extra 'all'
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× pip subprocess to install build dependencies did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.**
Is there a colab example that works these days?
The text was updated successfully, but these errors were encountered: