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[Feature Request] An option for pileup similar with truncate in pysam #414

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Crispy13 opened this issue Dec 16, 2023 · 0 comments
Open

[Feature Request] An option for pileup similar with truncate in pysam #414

Crispy13 opened this issue Dec 16, 2023 · 0 comments

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@Crispy13
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Crispy13 commented Dec 16, 2023 •
edited

Hi.
In pileup() of pysam, it seems that there is an option named truncate which get the function to iterate over only pileup columns whose pileup pos is within query start and end.

Could you add an option like this here as well?

It would be good to get read information for specific cases from very big bam files.
@Crispy13 Crispy13 changed the title [Feature Request] An option for pileup to iter over only records which include query position. [Feature Request] An option for pileup to iterate over only records including query position. Dec 16, 2023
@Crispy13 Crispy13 changed the title [Feature Request] An option for pileup to iterate over only records including query position. [Feature Request] An option for pileup similar with truncate in pysam Dec 16, 2023
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