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Support IUPAC extensions for Protein alphabet #435

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multimeric opened this issue Jun 8, 2021 · 2 comments
Closed

Support IUPAC extensions for Protein alphabet #435

multimeric opened this issue Jun 8, 2021 · 2 comments

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@multimeric
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multimeric commented Jun 8, 2021 •
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The IUPAC alphabets provide extensions to the sequence alphabets that match certain combinations of alphabets e.g. commonly known things like N for any nucleotide or X for any amino acid. It seems that we already have this for DNA. However there is no such equivalent in the protein module. This would be helpful for compatibility with more complex queries.
@tshauck tshauck mentioned this issue Aug 5, 2021
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@tshauck
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tshauck commented Aug 5, 2021

+1... Added a PR here that adds the IUPAC alphabet for amino acids: #444

@johanneskoester
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Thanks a lot, solved now.

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@tshauck @johanneskoester @multimeric