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ERROR: dependency ‘units’ is not available for package ‘sf’
* removing ‘/srv/rlibs/sf’
ERROR: dependencies ‘sf’, ‘rgdal’ are not available for package ‘dssd’
* removing ‘/srv/rlibs/dssd’
The downloaded source packages are in
‘/tmp/Rtmp37knOV/downloaded_packages’
Warning messages:
1: In install.packages("dssd") :
installation of package ‘units’ had non-zero exit status
2: In install.packages("dssd") :
installation of package ‘rgdal’ had non-zero exit status
3: In install.packages("dssd") :
installation of package ‘sf’ had non-zero exit status
4: In install.packages("dssd") :
installation of package ‘dssd’ had non-zero exit status
Installing units fails with
Configuration failed because libudunits2.so was not found. Try installing:
* deb: libudunits2-dev (Debian, Ubuntu, ...)
* rpm: udunits2-devel (Fedora, EPEL, ...)
* brew: udunits (OSX)
If udunits2 is already installed in a non-standard location, use:
--configure-args='--with-udunits2-lib=/usr/local/lib'
if the library was not found, and/or:
--configure-args='--with-udunits2-include=/usr/include/udunits2'
if the header was not found, replacing paths with appropriate values.
You can alternatively set UDUNITS2_INCLUDE and UDUNITS2_LIBS manually.
and installing gdal fails with
checking for gdal-config... no
no
configure: error: gdal-config not found or not executable.
@LHMarshall have you seen such problem before? On my machine, I had a fresh install of R yesterday, the same version which is used on Binder, and it runs perfectly fine.
The text was updated successfully, but these errors were encountered:
My understanding now is that a better way would be to use a docker container for R (apparently one of https://github.com/rocker-org?), and that will allow to run additional shell commands to install dependencies), and also will substantially speed up the time needed for the build. This (use of Docker) is actually similar to what we do for GAP in https://github.com/rse-standrewscs/gap-binder-template.
I am able to run
GettingStarted-distill.ipynb
which is based on the example by @LHMarshall from https://examples.distancesampling.org/dssd-getting-started/GettingStarted-distill.html locally, but I can't install in on Binder:Installing units fails with
and installing gdal fails with
@LHMarshall have you seen such problem before? On my machine, I had a fresh install of R yesterday, the same version which is used on Binder, and it runs perfectly fine.
The text was updated successfully, but these errors were encountered: