{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":36976981,"defaultBranch":"main","name":"qtl2","ownerLogin":"rqtl","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-06-06T11:03:11.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/9142954?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715610843.0","currentOid":""},"activityList":{"items":[{"before":"9fb9b76eb93e0e7919c133df57e720a8a66fc347","after":"2d39f6f76381cd25ab2ed531ade1f440ef23905f","ref":"refs/heads/main","pushedAt":"2024-05-13T14:33:03.000Z","pushType":"pr_merge","commitsCount":5,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Merge pull request #233 from kbroman/cran\n\nNew version on CRAN: 0.36","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2293019811\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/233\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/rqtl/qtl2/pull/233/hovercard\" href=\"https://github.com/rqtl/qtl2/pull/233\">#233</a> from kbroman/cran"}},{"before":"b39f922e4e2678c8cc540172ca77ccfc99d0ce3b","after":"9fb9b76eb93e0e7919c133df57e720a8a66fc347","ref":"refs/heads/main","pushedAt":"2024-03-15T19:49:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"lower tolerance on a test as failing on mac and windows","shortMessageHtmlLink":"lower tolerance on a test as failing on mac and windows"}},{"before":"0d3f156677ac85f21825d5d9e5246bd55142c0bb","after":"4c7beccdf97f98b8ba9a7bd4b556c74864a8028b","ref":"refs/heads/gh-pages","pushedAt":"2024-03-15T19:37:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Update user guide with fix of SDP panel in plot_snpasso()","shortMessageHtmlLink":"Update user guide with fix of SDP panel in plot_snpasso()"}},{"before":"b92e9e6bbfa06ca6273573dc53bc64f7dcdd9684","after":"b39f922e4e2678c8cc540172ca77ccfc99d0ce3b","ref":"refs/heads/main","pushedAt":"2024-03-15T18:41:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Fix bug in plot_snpasso() re SDP panel (Issue #232)","shortMessageHtmlLink":"Fix bug in plot_snpasso() re SDP panel (Issue <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2189213413\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/232\" data-hovercard-type=\"issue\" data-hovercard-url=\"/rqtl/qtl2/issues/232/hovercard\" href=\"https://github.com/rqtl/qtl2/issues/232\">#232</a>)"}},{"before":"0dd5a9fa7c3ff3939c5181c2e6740b95eff0e3f2","after":"0d3f156677ac85f21825d5d9e5246bd55142c0bb","ref":"refs/heads/gh-pages","pushedAt":"2023-11-28T23:34:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Update rqtl2_functions.md with changes in version 0.34\n\n- added find_dup_markers()\n\n- changed names read_csv() to fread_csv() and read_csv_numer() to fread_csv_numer()","shortMessageHtmlLink":"Update rqtl2_functions.md with changes in version 0.34"}},{"before":"5a3ed6c895053ab076917b83ad935be9aa779e66","after":"b92e9e6bbfa06ca6273573dc53bc64f7dcdd9684","ref":"refs/heads/main","pushedAt":"2023-11-28T23:22:01.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Merge pull request #231 from kbroman/cran\n\nFix compiler warning on CRAN","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2015457080\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/231\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/rqtl/qtl2/pull/231/hovercard\" href=\"https://github.com/rqtl/qtl2/pull/231\">#231</a> from kbroman/cran"}},{"before":"056ffe527a1a8ea72fba2e25ff82249c10fc941a","after":"5a3ed6c895053ab076917b83ad935be9aa779e66","ref":"refs/heads/main","pushedAt":"2023-11-12T13:50:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Add further tests of chisq_colpairs()","shortMessageHtmlLink":"Add further tests of chisq_colpairs()"}},{"before":"4ff007c7da1964c8ff15f7690f66f6f376ee72c0","after":"056ffe527a1a8ea72fba2e25ff82249c10fc941a","ref":"refs/heads/main","pushedAt":"2023-11-10T21:59:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Fix small bug in chisq_colpairs.cpp - Issue #228","shortMessageHtmlLink":"Fix small bug in chisq_colpairs.cpp - Issue <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1987730162\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/228\" data-hovercard-type=\"issue\" data-hovercard-url=\"/rqtl/qtl2/issues/228/hovercard\" href=\"https://github.com/rqtl/qtl2/issues/228\">#228</a>"}},{"before":"3791e7bf6b703e99e276164711926fafa838ecb5","after":"4ff007c7da1964c8ff15f7690f66f6f376ee72c0","ref":"refs/heads/main","pushedAt":"2023-11-10T21:52:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"find_dup_markers: need to include founder_geno, if available","shortMessageHtmlLink":"find_dup_markers: need to include founder_geno, if available"}},{"before":"d8dd24b3afb0e0faa57b441a83c44277d1f800cc","after":"3791e7bf6b703e99e276164711926fafa838ecb5","ref":"refs/heads/main","pushedAt":"2023-11-10T19:30:28.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Merge pull request #229 from kbroman/find_dup_markers\n\nImplement find_dup_markers(), port of qtl::findDupMarkers()","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1988215039\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/229\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/rqtl/qtl2/pull/229/hovercard\" href=\"https://github.com/rqtl/qtl2/pull/229\">#229</a> from kbroman/find_dup_markers"}},{"before":"0300dc75070005d50bc7bd723e9badc295d718d2","after":"d8dd24b3afb0e0faa57b441a83c44277d1f800cc","ref":"refs/heads/main","pushedAt":"2023-11-04T10:53:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Fix help for scan1blup, removing mention of n_intcovar (Issue #227)","shortMessageHtmlLink":"Fix help for scan1blup, removing mention of n_intcovar (Issue <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1975936212\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/227\" data-hovercard-type=\"issue\" data-hovercard-url=\"/rqtl/qtl2/issues/227/hovercard\" href=\"https://github.com/rqtl/qtl2/issues/227\">#227</a>)"}},{"before":"6412185530aa521aca10f3f4b811183661f0b58f","after":"0300dc75070005d50bc7bd723e9badc295d718d2","ref":"refs/heads/main","pushedAt":"2023-10-25T11:26:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Remove confusing text from help info for calc_kinship()","shortMessageHtmlLink":"Remove confusing text from help info for calc_kinship()"}},{"before":"fa8a36226421a0e2d7b796698151d7113a4191c7","after":"6412185530aa521aca10f3f4b811183661f0b58f","ref":"refs/heads/main","pushedAt":"2023-09-16T12:48:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"correct a comment in cross_risib8.cpp (multiply -> divide)","shortMessageHtmlLink":"correct a comment in cross_risib8.cpp (multiply -&gt; divide)"}},{"before":"8343447c7015d05052359e71013c7471662f8721","after":"fa8a36226421a0e2d7b796698151d7113a4191c7","ref":"refs/heads/main","pushedAt":"2023-08-24T15:16:19.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Fix bug introduced in calc_het()\n\n- dimnames(pr) for output of calc_genoprob gives chromosome-specific\n  genotype names","shortMessageHtmlLink":"Fix bug introduced in calc_het()"}},{"before":"32d5e083ba049c6629686fef03484183d5219eb1","after":"0dd5a9fa7c3ff3939c5181c2e6740b95eff0e3f2","ref":"refs/heads/gh-pages","pushedAt":"2023-08-24T10:50:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"rqtl2_functions.md: link (un)smooth_gmap to help page","shortMessageHtmlLink":"rqtl2_functions.md: link (un)smooth_gmap to help page"}},{"before":"cbda13d3163b1800db7e724d5f13f9d5d03ff240","after":"8343447c7015d05052359e71013c7471662f8721","ref":"refs/heads/main","pushedAt":"2023-04-26T11:58:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Add zenodo badge to README","shortMessageHtmlLink":"Add zenodo badge to README"}},{"before":"b5e3baee9e2f9a4fbe75c31d90dd2ca7ac1fcfae","after":"32d5e083ba049c6629686fef03484183d5219eb1","ref":"refs/heads/gh-pages","pushedAt":"2023-04-24T13:25:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Update badges on web; add zenodo badge to README","shortMessageHtmlLink":"Update badges on web; add zenodo badge to README"}},{"before":"d5f578d111c378531d3cd427c517cd4ecf31ef1d","after":"b5e3baee9e2f9a4fbe75c31d90dd2ca7ac1fcfae","ref":"refs/heads/gh-pages","pushedAt":"2023-04-23T16:09:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Add zenodo badge","shortMessageHtmlLink":"Add zenodo badge"}},{"before":"c4c410278183cd115e7aebd8b2ed969bf6fd09d3","after":"d5f578d111c378531d3cd427c517cd4ecf31ef1d","ref":"refs/heads/gh-pages","pushedAt":"2023-04-22T16:49:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"User Guide: Mention Matt Vincent as source of new sqlite db","shortMessageHtmlLink":"User Guide: Mention Matt Vincent as source of new sqlite db"}},{"before":"f6aca2d528a85e9ca58a7574883065a85d577ea3","after":"c4c410278183cd115e7aebd8b2ed969bf6fd09d3","ref":"refs/heads/gh-pages","pushedAt":"2023-04-22T03:39:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Adjustments re changes to create_*_query_func()","shortMessageHtmlLink":"Adjustments re changes to create_*_query_func()"}},{"before":"2749821b9ad53c1904658fce22473bf17ad6cbfa","after":"cbda13d3163b1800db7e724d5f13f9d5d03ff240","ref":"refs/heads/main","pushedAt":"2023-04-22T03:31:31.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Merge pull request #217 from kbroman/cran\n\nchanges for CRAN ver 0.32","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1679266935\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/217\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/rqtl/qtl2/pull/217/hovercard\" href=\"https://github.com/rqtl/qtl2/pull/217\">#217</a> from kbroman/cran"}},{"before":"942f346deb58e5080fac9657535bc4168953666e","after":"2749821b9ad53c1904658fce22473bf17ad6cbfa","ref":"refs/heads/main","pushedAt":"2023-04-21T01:14:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Fix Issue #216, allowing strands to be +/- 1 in plot_genes()","shortMessageHtmlLink":"Fix Issue <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1677556960\" data-permission-text=\"Title is private\" data-url=\"https://github.com/rqtl/qtl2/issues/216\" data-hovercard-type=\"issue\" data-hovercard-url=\"/rqtl/qtl2/issues/216/hovercard\" href=\"https://github.com/rqtl/qtl2/issues/216\">#216</a>, allowing strands to be +/- 1 in plot_genes()"}},{"before":"ceffa5756ea1f18223a71678da5c8e7c28ac01f4","after":"942f346deb58e5080fac9657535bc4168953666e","ref":"refs/heads/main","pushedAt":"2023-04-21T00:02:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Add a test of that last problem with plot_genes()","shortMessageHtmlLink":"Add a test of that last problem with plot_genes()"}},{"before":"980dbf2eb555ec82c89254e51e794ce11323859e","after":"ceffa5756ea1f18223a71678da5c8e7c28ac01f4","ref":"refs/heads/main","pushedAt":"2023-04-20T23:42:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Fix bug in plot_genes(): stop -> end in one place","shortMessageHtmlLink":"Fix bug in plot_genes(): stop -&gt; end in one place"}},{"before":"e266cf28937cba3beb179e0c243a74eabedca8bd","after":"f6aca2d528a85e9ca58a7574883065a85d577ea3","ref":"refs/heads/gh-pages","pushedAt":"2023-04-20T19:14:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Update user guide to mention GRCm39 version of variant database","shortMessageHtmlLink":"Update user guide to mention GRCm39 version of variant database"}},{"before":"365323c95de73b7e4d1ca1cab4b5087cfc1e65e6","after":"e266cf28937cba3beb179e0c243a74eabedca8bd","ref":"refs/heads/gh-pages","pushedAt":"2023-04-20T18:00:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"pages/move_to_build39: Mention Matt V re sqlite database","shortMessageHtmlLink":"pages/move_to_build39: Mention Matt V re sqlite database"}},{"before":"f4d176d1243e47f36ce9fd5fbe1735fb6c8ab59b","after":"365323c95de73b7e4d1ca1cab4b5087cfc1e65e6","ref":"refs/heads/gh-pages","pushedAt":"2023-04-20T17:48:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Clean up text in move_to_build39.md","shortMessageHtmlLink":"Clean up text in move_to_build39.md"}},{"before":"4c141b2d764ff9860a5cdf47607dad101d172dcf","after":"f4d176d1243e47f36ce9fd5fbe1735fb6c8ab59b","ref":"refs/heads/gh-pages","pushedAt":"2023-04-20T17:25:19.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Revise title of move_to_build39.md","shortMessageHtmlLink":"Revise title of move_to_build39.md"}},{"before":"f9c60dad882255a593db46c041f3dbb30d22b3d2","after":"4c141b2d764ff9860a5cdf47607dad101d172dcf","ref":"refs/heads/gh-pages","pushedAt":"2023-04-20T17:24:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Small edit to prep_do_data.md","shortMessageHtmlLink":"Small edit to prep_do_data.md"}},{"before":"49086fd2cad33edcdf0641a53ac71a33a1393f7c","after":"f9c60dad882255a593db46c041f3dbb30d22b3d2","ref":"refs/heads/gh-pages","pushedAt":"2023-04-20T17:19:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"kbroman","name":"Karl Broman","path":"/kbroman","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/53972?s=80&v=4"},"commit":{"message":"Add info re mouse genome build GRCm39","shortMessageHtmlLink":"Add info re mouse genome build GRCm39"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAESIJrewA","startCursor":null,"endCursor":null}},"title":"Activity · rqtl/qtl2"}