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setup.cfg
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setup.cfg
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[metadata]
name = ultrack
version = 0.4.0
author = Jordao Bragantini
author_email = jordao.bragantini@czbiohub.org
description = Large-scale multi-hypotheses cell tracking
long_description = file: README.md
long_description_content_type = text/markdown
license_files = LICENSE
[options]
python_requires = >=3.9,<3.12
install_requires =
click >=8.1.3,<9.0
rich >=13.3.5,<14.0
magicgui >=0.7.2,<0.8.0
toml >=0.10.2,<0.11.0
pydantic >=1.10.7,<2.0.0
higra >=0.6.6,<0.7.0
zarr >=2.15.0,<3.0.0
napari >=0.4.18,<0.5.0
pillow >=10.0.0,<11.0.0
numba >=0.57.0,<0.58.0
SQLAlchemy >=1.4.40,<2.0.0
seaborn >=0.13.0,<0.14.0
imagecodecs >=2023.3.16,<2024.0.0
scikit-image >=0.21.0,<0.22.0
blosc2 >=2.2.0,<3.0.0
imageio >=2.28.0,<2.29.0
psycopg2-binary >=2.9.6,<3.0.0
cloudpickle >=3.0.0,<4.0.0
psygnal >=0.9.0,<1.0.0
pandas >=2.0.1,<2.2
mip >=1.15.0,<2.0.0
torch >=2.0.1,<3.0.0
gurobipy >=9.0.0
edt >=2.3.2
fastapi >= 0.109.2
websocket >= 0.2.1
urllib3 < 2.0
ome-zarr >= 0.8.3,<0.9.0 # TODO: unpin when using iohub interface
uvicorn >= 0.27.0.post1
httpx >= 0.26.0
websockets >= 12.0
[options.extras_require]
testing =
pytest >=7.3.1,<8.0.0
pre-commit >=3.2.2,<4.0.0
pytest-qt >=4.2.0,<5.0.0
asv >=0.5.1,<0.6.0
testing.postgresql >=1.3.0,<2.0.0
# git+https://github.com/hadim/pytrackmate.git NOT WORKING WITH setup.cfg
docs =
sphinxcontrib-applehelp ==1.0.4
sphinx-rtd-theme >=1.3.0,<2.0.0
sphinx-click >=5.0.1,<6.0.0
[options.entry_points]
console_scripts =
ultrack = ultrack.cli.main:main
napari.manifest =
ultrack = ultrack:napari.yaml
[options.package_data]
ultrack = napari.yaml