You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
#__all__ = ['change_background', 'visualiseGenome', 'get_args', 'main', 'addText', 'parseColors', 'getArgs',
# 'listdir_r', 'ends_sorted', 'create_kar', 'create_feature', 'base_complete', 'base', 'get_categories',
# 'create_kar_complete', 'create_feature_complete', 'new_loc', 'write_cog_files', 'write_lines',
# 'createRaw', 'create_conf', 'create_conf_main', 'get_args_', 'write_content', 'generate_result',
# 'makeGC', 'createGC', 'modify_locus', 'genbankToFaa', 'mainFaa', 'gbkToFna', 'mainFna', 'mergeImages',
# '__version__'
# ]
__version__ = '0.4.3'
__all__ = ['__version__']
/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/dist.py:472: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2024-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
Traceback (most recent call last):
File "<string>", line 36, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-76ctju7b/genovi_646f1292e06447638bfedfd88afa8d25/setup.py", line 88, in <module>
'dev': extra_dev,
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/__init__.py", line 103, in setup
return distutils.core.setup(**attrs)
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/_distutils/core.py", line 172, in setup
ok = dist.parse_command_line()
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 475, in parse_command_line
args = self._parse_command_opts(parser, args)
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/dist.py", line 863, in _parse_command_opts
nargs = _Distribution._parse_command_opts(self, parser, args)
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 534, in _parse_command_opts
cmd_class = self.get_command_class(command)
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/dist.py", line 710, in get_command_class
self.cmdclass[command] = cmdclass = ep.load()
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/setuptools/_vendor/importlib_metadata/__init__.py", line 208, in load
module = import_module(match.group('module'))
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/importlib/__init__.py", line 127, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
File "<frozen importlib._bootstrap>", line 1006, in _gcd_import
File "<frozen importlib._bootstrap>", line 983, in _find_and_load
File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 677, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 728, in exec_module
File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/bdist_wheel.py", line 28, in <module>
from .metadata import pkginfo_to_metadata
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/metadata.py", line 16, in <module>
from .vendored.packaging.requirements import Requirement
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/requirements.py", line 7, in <module>
from ._parser import parse_requirement as _parse_requirement
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/_parser.py", line 10, in <module>
from ._tokenizer import DEFAULT_RULES, Tokenizer
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/_tokenizer.py", line 6, in <module>
from .specifiers import Specifier
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/specifiers.py", line 16, in <module>
from .utils import canonicalize_version
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/utils.py", line 8, in <module>
from .tags import Tag, parse_tag
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/tags.py", line 26, in <module>
from . import _manylinux, _musllinux
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/site-packages/wheel/vendored/packaging/_manylinux.py", line 171, in <module>
def _get_glibc_version() -> Tuple[int, int]:
File "/home/jang/miniconda3/envs/genovi/lib/python3.7/functools.py", line 490, in lru_cache
raise TypeError('Expected maxsize to be an integer or None')
TypeError: Expected maxsize to be an integer or None
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for genovi
Running setup.py clean for genovi
Failed to build genovi
ERROR: Could not build wheels for genovi, which is required to install pyproject.toml-based projects
Any hints?
Bests,
Jan
The text was updated successfully, but these errors were encountered:
Hello,
Thank you for a really great tool.
I was able to install it on my laptop at home with Ubuntu 20.04 LTS but failed on Ubuntu workstations.
In the lab I'm using Ubuntu 20.04 LTS:
mamba 1.4.9
conda 23.5.2
and 16.04 LTS:
mamba 0.25.0
conda 4.14.0
When I tried to install with
pip install genovi
Building wheels for collected packages: genovi
Building wheel for genovi (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [87 lines of output]
scripts init.py
#from .GenoVi import change_background, visualiseGenome, get_args, main
#from .addText import addText
#from .colors import parseColors
#from .create_raw import getArgs, listdir_r, ends_sorted, create_kar, create_feature, base_complete, base, get_categories, create_kar_complete, create_feature_complete, new_loc, write_cog_files, write_lines, createRaw
#from .createConf import create_conf, create_conf_main
#from .GC_analysis import get_args_, write_content, generate_result, makeGC, createGC
#from .genbank2faa import modify_locus, genbankToFaa, mainFaa
#from .genbank2fna import gbkToFna, mainFna
#from .mergeImages import mergeImages
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for genovi
Running setup.py clean for genovi
Failed to build genovi
ERROR: Could not build wheels for genovi, which is required to install pyproject.toml-based projects
Any hints?
Bests,
Jan
The text was updated successfully, but these errors were encountered: