Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

UniProt_downloader.sh does not work #2

Open
sanyalab opened this issue Dec 2, 2023 · 0 comments
Open

UniProt_downloader.sh does not work #2

sanyalab opened this issue Dec 2, 2023 · 0 comments

Comments

@sanyalab
Copy link

sanyalab commented Dec 2, 2023

Hello,

Please change the following hard-coded line in UniProt_downloader.sh.

xargs -n 1 -P $PROCESSORS -I % curl -s https://www.uniprot.org/uniprot/%.fasta \

TO

xargs -n 1 -P $PROCESSORS -I % curl -s https://rest.uniprot.org/uniprotkb/%.fasta \

Without this curl cannot download files

Thanks
Abhijit
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@sanyalab