Availability of processed datasets for example reproducibility

[ijmiller2]

Dear Reymond Group,

Thank you very much for the development and release of this great tool! As I started to look through some of the examples, I wondered if you might be able to make the processed data available for the worked examples. I'm guessing my data will be most similar in format/shape to the RNA Seq data, but I'm having some issues confirming that.

For instance, in the RNA Sequencing example, your input files are generically named ("data.csv.xz" and "labels.csv":

DATA = pd.read_csv("data.csv.xz", index_col=0, sep=",")
LABELS = pd.read_csv("labels.csv", index_col=0, sep=",")

I see at the top of that file the data source is https://gdc.cancer.gov/about-data/publications/pancanatlas, but when I follow that URL, I'm not clear on which file in particular I should download and if there's any further processing required to get the "labels.csv."

Is it the EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv file (it's 1.88 GB in size)?

So, I'm wondering if you'd be able to host the processed example data files on your site? Or offer more info on their shape/format?

Thanks again,
Ian