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Kernel dying when trying to run tm.layout_from_edge_list() #11

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lfnothias opened this issue Jun 26, 2020 · 1 comment
Open

Kernel dying when trying to run tm.layout_from_edge_list() #11

lfnothias opened this issue Jun 26, 2020 · 1 comment

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@lfnothias
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lfnothias commented Jun 26, 2020

Hi tmap @reymond-group, @daenuprobst @undeadpixel, and community

First of all ! It is a great tool, so congratulations for your work and manuscript, and thanks a lot for your effort support it.

The tmap documentation is very clear and detailed, however I found the following issue:

  • I am trying to run tm.layout_from_edge_list() on a pairwise similarity list, and was able to run the example provided on https://tmap.gdb.tools/#simple-graph. But when trying to run from a different edge_list object, the kernel dies without any error message, so I am very puzzled.
    I looked at the object type and it matches perfectly the exemple object .. so I am very puzzled.

Anyone had seen a similar issue ? Anyone would know what is wrong with this ?
I put a Binder link online so you can directly run the notebook online.
https://mybinder.org/v2/gh/lfnothias/tmap_testing/46b4bbf833fdd22fdbc1de26dd0157cb663f4006.

Thanks in advance

@ky66
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ky66 commented Apr 7, 2022

I tried Google Colab and it started working.

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